DRSC/TRiP Functional Genomics Resources

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Protein Alignment rt and Sdf2

DIOPT Version :10

Sequence 1:NP_524025.2 Gene:rt / 39297 FlyBaseID:FBgn0003292 Length:886 Species:Drosophila melanogaster
Sequence 2:NP_001099273.2 Gene:Sdf2 / 287470 RGDID:1307274 Length:219 Species:Rattus norvegicus


Alignment Length:248 Identity:70/248 - (28%)
Similarity:98/248 - (39%) Gaps:76/248 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   440 GGLASITKGQPLAVVH-GSQITL---RHTHGRTCWLHSHAAVYPVRYPDKRGS-SHQQQVT-CYS 498
            |||.|......:|||. ||.:.|   ||    ...||||    .|||    || |.||.|| ..|
  Rat    18 GGLWSAVGASNMAVVTCGSVVKLLNIRH----NVRLHSH----DVRY----GSGSGQQSVTGVTS 70

  Fly   499 FKDVNNWWLVKRPTKENLVVGDEPDIIRHGEIIQLVHGITSRALNSHDVAAAMTPQCQEVSCYID 563
            ..|.|::|.::..|   ..|.:....|:.|:.|:|.|..|.|.|:||...:.::.. ||||.:  
  Rat    71 VDDSNSYWRIRGKT---ATVCERGTPIKCGQPIRLTHINTGRNLHSHHFTSPLSGN-QEVSAF-- 129

  Fly   564 YEIKMAGELLWRVEILNRDSEGDI---WHAI--------KSEVRLVHVSTEASLKFSGRQL--PE 615
                  ||          :.|||.   |..:        ..|||..|.||:..|..:|.|.  |.
  Rat   130 ------GE----------EGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTDVLLSVTGEQYGRPI 178

  Fly   616 WGFNQHEVVADREKAIH------EDAIWNVEEHRYTQTEDHRERERQMLTAEM 662
            .|          :|.:|      ::..|...|..:.       :..::|.||:
  Rat   179 SG----------QKEVHGMAQPSQNNYWKAMEGIFM-------KPSELLRAEV 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rtNP_524025.2 PMT 178..421 CDD:396786
beta-trefoil_MIR_POMT1 453..644 CDD:467752 62/215 (29%)
PMT_4TMC 674..873 CDD:465056
Sdf2NP_001099273.2 beta-trefoil_MIR_SDF2_meta 32..206 CDD:467764 61/224 (27%)
Blue background indicates that the domain is not in the aligned region.

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