DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11726 and trnau1ap

DIOPT Version :10

Sequence 1:NP_648461.1 Gene:CG11726 / 39275 FlyBaseID:FBgn0036156 Length:291 Species:Drosophila melanogaster
Sequence 2:XP_031761024.1 Gene:trnau1ap / 779667 XenbaseID:XB-GENE-5809452 Length:204 Species:Xenopus tropicalis


Alignment Length:385 Identity:70/385 - (18%)
Similarity:113/385 - (29%) Gaps:157/385 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 SRRDEGSSHSGVRSHGLKSRPISNNTSPMTSPFTSPRGKDQ--------TLGDLFGSV----KKL 175
            |...:|.:.:| :||        :|..|...||....|..:        |||..|..:    .::
 Frog   139 SEDSDGENGTG-QSH--------HNVFPDGKPFPHHPGWRRWNFIYVFHTLGQYFQKLGRCSVRV 194

  Fly   176 SSPTSN--------------------SPINGVKQ--SSPSSISKSASKRDKDERGSTSSATSTSL 218
            |..|:|                    .||..||.  .....|....:...|::|.|:.......|
 Frog   195 SVNTANVTLGPQLMEVTVYRRHGRAYVPIAQVKDVYVVTDQIPVFVTMFQKNDRNSSDETFLKDL 259

  Fly   219 P---------------YSKSK-------------STRDTA-------GSIAKSISRRSTTPIVFS 248
            |               ||...             ||..|.       |:.:.:::.::..|....
 Frog   260 PIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVSTNHTVNHTYVLNGTFSLNLTVKAAAPGPCP 324

  Fly   249 QSTPPKKP--------PAVEKKLE--------CTLEELCHGGVKNIKIKRDIITDEGL----IMQ 293
            ...||.:|        ||.:..||        |.:....|       .:..|...||:    |:|
 Frog   325 PPPPPPRPSKPTPSLGPAGDNPLELSRIPDENCQINRYGH-------FQATITIVEGILEVNIIQ 382

  Fly   294 QEEMLRVNIQPGWKKGTKITFEGVGNEKPGYLPEDITFVVEEKRHPLFK---------------- 342
            ..::|   :...|.:.:.|.|.....   |.:|.::..::.:....:.:                
 Frog   383 MTDVL---MPVPWPESSLIDFVVTCQ---GSIPTEVCTIISDPTCEITQNTVCSPVDVDEMCLLT 441

  Fly   343 -RR--------------GDDLEIAVEIPLLKALTGCKLSV-------PLLSGESMSITVG 380
             ||              |||..:        |||...:||       ||....|..|:||
 Frog   442 VRRTFNGSGTYCVNLTLGDDTSL--------ALTSTLISVPDRDPASPLRMANSALISVG 493

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11726NP_648461.1 RRM_SF 83..150 CDD:473069 6/26 (23%)
trnau1apXP_031761024.1 RRM1_SECp43 3..86 CDD:410022
Trnau1ap 105..201 CDD:465438 16/70 (23%)
Blue background indicates that the domain is not in the aligned region.

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