DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11726 and Rbm34

DIOPT Version :9

Sequence 1:NP_648461.1 Gene:CG11726 / 39275 FlyBaseID:FBgn0036156 Length:291 Species:Drosophila melanogaster
Sequence 2:NP_766350.2 Gene:Rbm34 / 52202 MGIID:1098653 Length:442 Species:Mus musculus


Alignment Length:152 Identity:31/152 - (20%)
Similarity:63/152 - (41%) Gaps:28/152 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 MSKSSRSFKLPPVSSSS--VSSVSGSESGQGLEDMLHVT-------------KVRTSQVDNAELF 53
            :.:.||..|:..:|.:.  :::...:.:...||:.||..             ||...:..:..|.
Mouse   101 LQEPSRKVKVKKLSDADKRLANRESALASADLEEELHQDQGQGRRRRSQSRGKVADGEALDVALS 165

  Fly    54 MYGDGPKKSNSDLQKKVSTPDPEEEVSMEPPFVALVSNLPMECTEGELRKVFTSF----SIRSLT 114
            :..||.:::...:       :|||| .::......|.|||:.|.:.:|:..|..:    |:|..:
Mouse   166 LAKDGGQRTKIPV-------NPEEE-RLKNERTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRS 222

  Fly   115 I-PKKGKRPKGFAYVEMDSRED 135
            : |.:|...|..|.::.....|
Mouse   223 VMPAEGTLTKKLAAIKRKFHPD 244

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11726NP_648461.1 RRM_SF 84..156 CDD:302621 14/57 (25%)
Rbm34NP_766350.2 RRM1_RBM34 189..280 CDD:240840 14/56 (25%)
RRM2_RBM34 292..364 CDD:240841
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23236
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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