Protein Alignment CG11726 and sqd

DIOPT Version :10

• Sequence 1: NP_648461.1
• Gene: CG11726 / 39275
• FlyBaseID: FBgn0036156
• Length: 291
• Species: Drosophila melanogaster
• Sequence 2: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Alignment Length: 236
• Identity: 53/236 - (22%)
• Similarity: 79/236 - (33%)
• Gaps: 64/236 - (27%)

  Fly    46 QVD---NAELF---MYGDGPKKSNSDLQKKVSTPDPEEEVS-----MEPPFVALVSNLPMECTEG 99
            |||   |.|.|   :..|||...|.|.....||....:..|     .:......|..|..|.||.
  Fly     6 QVDTEINGEDFTKDVTADGPGSENGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEK 70

  Fly   100 ELRKVFTSF----SIRSLTIPKKGKRPKGFAYVEMDSR----------EDLVRLLKMDKLKCRGR 150
            |||..|..:    ||...|.|:.| |.:|||::...:.          |.::...|:|..|.:.|
  Fly    71 ELRDHFGKYGEIESINVKTDPQTG-RSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKAR 134

  Fly   151 CLMAKIGQLPPEPPTKAAGDGFSLFTCSGRQFDINSSHYSASVSDLSTIDSPISARNS------- 208
            .....:|.|..|..                  |.....|.....::..::.|...:.|
  Fly   135 HGKIFVGGLTTEIS------------------DEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCF 181

  Fly   209 -PFPSES---------ESSFFGRDNPIKRIPSSTEEVERRM 239
             .|.||.         :....|::..:||   :|.:.|.:|
  Fly   182 ITFDSEQVVTDLLKTPKQKIAGKEVDVKR---ATPKPENQM 219

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG11726	NP_648461.1	RRM_SF	83..150	CDD:473069	22/80 (28%)
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	21/71 (30%)
		RRM2_hnRNPD_like	137..211	CDD:240775	13/94 (14%)