DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11726 and pabpn1

DIOPT Version :10

Sequence 1:NP_648461.1 Gene:CG11726 / 39275 FlyBaseID:FBgn0036156 Length:291 Species:Drosophila melanogaster
Sequence 2:NP_998424.1 Gene:pabpn1 / 406543 ZFINID:ZDB-GENE-040426-2401 Length:284 Species:Danio rerio


Alignment Length:183 Identity:48/183 - (26%)
Similarity:81/183 - (44%) Gaps:27/183 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 GSESGQ-GLED-MLHVTKVRTSQV-DNAELFMYGDGPKKSNSDLQKKVS-TPDP--------EEE 78
            |.:.|: .:|| .|...|.|..:: :.||..      |:..::::|::: :|.|        ||:
Zfish    34 GLDEGEAAIEDPELEAIKARVREMEEEAEKL------KELQNEVEKQMNLSPPPAGPVIMSIEEK 92

  Fly    79 VSMEPPFVALVSNLPMECTEGELRKVFTSF-SIRSLTI--PKKGKRPKGFAYVEMDSREDLVRLL 140
            :..:...: .|.|:....|..||...|... |:..:||  .|....||||||:|...:|.:...:
Zfish    93 IEADGRSI-YVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFADKESVRTAM 156

  Fly   141 KMDKLKCRGRCLMAKIGQLPPEPPTKAAGD-GF--SLFTCSGRQFDINSSHYS 190
            .:|:...|||  ..|:|......|..:..| ||  :.|...|..|...:.:||
Zfish   157 ALDESLFRGR--QIKVGAKRTNRPGISTTDRGFPRARFRSRGGNFSSRARYYS 207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11726NP_648461.1 RRM_SF 83..150 CDD:473069 20/69 (29%)
pabpn1NP_998424.1 RRM_II_PABPN1 99..174 CDD:409966 24/77 (31%)

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