DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11726 and hnrnpa0a

DIOPT Version :10

Sequence 1:NP_648461.1 Gene:CG11726 / 39275 FlyBaseID:FBgn0036156 Length:291 Species:Drosophila melanogaster
Sequence 2:NP_997810.2 Gene:hnrnpa0a / 323529 ZFINID:ZDB-GENE-030131-2249 Length:305 Species:Danio rerio


Alignment Length:113 Identity:31/113 - (27%)
Similarity:46/113 - (40%) Gaps:19/113 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 VRTSQVDNAELFMYG-----DGPKKSNSDLQKKVSTPD---PEEEVSMEPPFVALVSNLPMECTE 98
            |..|..|.|:..|..     ||   :|.:|::.|:..|   ||....::..|   :..|..:..|
Zfish    56 VTYSSPDEADSAMSARPHILDG---NNVELKRAVAREDAGKPEALAKVKKIF---IGGLKDDIEE 114

  Fly    99 GELRKVFTSF----SIRSLTIPKKG-KRPKGFAYVEMDSREDLVRLLK 141
            ..||..|:.|    ....:|..:.| ||..||.|.|.:...|...:||
Zfish   115 DHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAVVLK 162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11726NP_648461.1 RRM_SF 83..150 CDD:473069 18/64 (28%)
hnrnpa0aNP_997810.2 RRM1_hnRNPA0 8..86 CDD:409764 9/32 (28%)
RRM_SF 102..181 CDD:473069 18/64 (28%)
HnRNPA1 260..286 CDD:463312
Blue background indicates that the domain is not in the aligned region.

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