DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11726 and Eif4b

DIOPT Version :10

Sequence 1:NP_648461.1 Gene:CG11726 / 39275 FlyBaseID:FBgn0036156 Length:291 Species:Drosophila melanogaster
Sequence 2:NP_001008325.1 Gene:Eif4b / 300253 RGDID:1306479 Length:611 Species:Rattus norvegicus


Alignment Length:416 Identity:68/416 - (16%)
Similarity:113/416 - (27%) Gaps:193/416 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 FKLPPVSSSSVSSVSGSESGQGLEDMLHVTKVRTSQVDNAELFMYGDGPKKSNSDLQKKVSTPDP 75
            ::.||:..|.:.:...:              .|...:|.:.|      ||               
  Rat    63 YRAPPIDRSILPTAPRA--------------AREPNIDRSRL------PK--------------- 92

  Fly    76 EEEVSMEPPFVALVSNLPMECTEGELRKVFTSFSIRSLTIPKKGKRP---KGFAYVEMDSREDLV 137
                  .||:.|.:.|||.:.||..::..|...:|.::.:|::...|   |||.|.|.:..:.|:
  Rat    93 ------SPPYTAFLGNLPYDVTEDSIKDFFRGLNISAVRLPREPSNPDRLKGFGYAEFEDLDSLL 151

  Fly   138 RLLKMDKLKCRGRCLMAKIG--------------------------------------QLPPEPP 164
            ..|.:::.....|.:...:.                                      ..||...
  Rat   152 SALSLNEESLGNRRIRVDVADQAQDKDRDDRSFGRDRNRDSDKTDTDWRARPATDSFDDYPPRRG 216

  Fly   165 TKAAGD----------------------------------------------GFSLFTCSGR--- 180
            ..:.||                                              |:.....|||   
  Rat   217 DDSFGDKYRDRYESDRYRDGYRDGYRDGPRRDMDRYGGRDRYDDRGSRDYDRGYDSRIGSGRRAF 281

  Fly   181 -------------------QFDINSSHYSASVSDLSTIDSPISARNSP-----------FPSESE 215
                               ::|.......:|..|.|..|.....|..|           .|.|.:
  Rat   282 GSGYRRDDDYRGGGDRYEDRYDRRDDRSWSSRDDYSRDDYRRDDRGPPQRPKLNLKPRSTPKEDD 346

  Fly   216 S-----------SFFGRDNPIKRIPSSTEEVERRMQIRLQKLAEFENSESERIKSECEDDP---- 265
            |           |.||...|:     .|...||.::.||||       |.|:::.:. |:|    
  Rat   347 SSASTSQSSRAASIFGGAKPV-----DTAAREREVEERLQK-------EQEKLQRQL-DEPKLDR 398

  Fly   266 ---DAFMSW-SDALDEIRKSETDSSN 287
               :...|| |:...|..:|.|.|.:
  Rat   399 RPRERHPSWRSEETQERERSRTGSES 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11726NP_648461.1 RRM_SF 83..150 CDD:473069 19/69 (28%)
Eif4bNP_001008325.1 RRM_eIF4B 94..175 CDD:409836 20/80 (25%)
PRK12678 142..>294 CDD:237171 12/151 (8%)
PTZ00108 <372..582 CDD:240271 17/61 (28%)

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