DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir68a and grik5

DIOPT Version :9

Sequence 1:NP_648455.2 Gene:Ir68a / 39269 FlyBaseID:FBgn0036150 Length:704 Species:Drosophila melanogaster
Sequence 2:NP_001315085.1 Gene:grik5 / 798791 ZFINID:ZDB-GENE-070821-6 Length:1067 Species:Danio rerio


Alignment Length:529 Identity:107/529 - (20%)
Similarity:201/529 - (37%) Gaps:147/529 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   201 ELGKGLNGRILFADKTSNLFGTSLPVAISEHV-------------PMVLWANATKSFQGVE---- 248
            |:|      |.:::.|..:..|||.:.:||.:             |.|:.....:.|:|.|    
Zfish   400 EIG------IWYSNNTLLMNSTSLDINVSETLANKSLIITTILENPYVMRKINYQEFEGNEQYEG 458

  Fly   249 --VEIMNALGKALNFKPVYYKPNQTENMDWTELDGGASVAYGSGNPDGYAQNGTHIDSMLVDEVA 311
              |:::..|...|.|.   |:....:       ||    .||:..|:| :..|      :|.|:.
Zfish   459 FCVDMLRELSDILKFT---YRIKLVD-------DG----LYGAPEPNG-SWTG------MVGELI 502

  Fly   312 AHSARFAIGDLHLFQVYLKLVELSAPHNFECLTFLTPESS--------TDNSWQTFILPFSAGMW 368
            ...|..|:....:.....|:::.|.|       |:|...|        ....:.:|:.|||..:|
Zfish   503 NRKADLAVAAFTITSEREKVIDFSKP-------FMTLGISILYRVHIGRKPGYFSFLDPFSPAVW 560

  Fly   369 VGVLLSLFVVGTVFYAISFLNAIINGNVSSEFFR---CLRPNRNVPMDPKIYRRISFRIAISRYR 430
            :.:||:...|..|.    ||:|.::   ..|::.   |||..|::                    
Zfish   561 LFMLLAYLAVSCVL----FLSARLS---PYEWYNPHPCLRERRDL-------------------- 598

  Fly   431 SSKGDRMPRDLFDGYT--NCILLTYSMLLYVALPRMPRNWPLRVLTGWYWIYCILLVATYRASFT 493
                      |.:.||  |.:.......:......|||....|.::|.:|.:.::::::|.|:..
Zfish   599 ----------LENQYTLGNSLWFPVGGFMQQGSEIMPRALSTRCVSGVWWAFTLIIISSYTANLA 653

  Fly   494 AILANPAARVTIDTLEDLL-RSHIPPST---GATENRQFFLEANDEVARKVGEKM-----EVFGY 549
            |.|......|.|::.:||. :::|...|   |:|  ..||:.:..:..:::...|     .||..
Zfish   654 AFLTVQRMEVPIESPDDLADQTNIQYGTIHGGST--MTFFMNSRYQTYQRMWNYMYSKQPSVFVK 716

  Fly   550 S-DDLTSRIAKGQCAYY----DNEFYLRYLRVADESGSALHIMKECVLYMPV-----------VL 598
            | ::..:|:...:.|:.    .||:: |.|.........|...|...:.||:           ||
Zfish   717 STEEGIARVVNSKYAFLLESTMNEYH-RSLNCNLTQIGGLLDTKGYGIGMPLGSPFRDELSLAVL 780

  Fly   599 AMEKNSALKPRVDASIQHLAEGGLIAKWLKDAIEHLPAEALAQQEALMNIQKFWSSFVALLIGYV 663
            .:::|:    |::...:...|||           ..|.|...:.:.| .::.....||.|:.|.:
Zfish   781 QLQENN----RLEILKRRWWEGG-----------KCPKEEDHRAKGL-GMENIGGIFVVLICGLI 829

  Fly   664 ISMLTLLAE 672
            |::...:.|
Zfish   830 IAVFVAVME 838

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68aNP_648455.2 Lig_chan 429..661 CDD:278489 51/258 (20%)
grik5NP_001315085.1 PBP1_iGluR_Kainate_KA1_2 38..412 CDD:107389 4/17 (24%)
ANF_receptor 55..392 CDD:279440
Periplasmic_Binding_Protein_Type_1 <313..383 CDD:299141
Periplasmic_Binding_Protein_Type_2 427..797 CDD:304360 86/441 (20%)
Lig_chan 558..828 CDD:278489 64/325 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591181
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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