DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir68a and grik5-like.1

DIOPT Version :9

Sequence 1:NP_648455.2 Gene:Ir68a / 39269 FlyBaseID:FBgn0036150 Length:704 Species:Drosophila melanogaster
Sequence 2:NP_001072565.1 Gene:grik5-like.1 / 780020 XenbaseID:XB-GENE-5860197 Length:479 Species:Xenopus tropicalis


Alignment Length:475 Identity:97/475 - (20%)
Similarity:176/475 - (37%) Gaps:124/475 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   242 KSFQGVE---VEIMNALGKALNFKPVYYKPNQTENMDWTELDGGASVAYGSGNPDGYAQNGTHID 303
            |:..|:|   :::::.|.::|.|           |....|:..|   .||:.:.|| ..||    
 Frog    56 KTESGMEGFCIDLLSELAQSLGF-----------NYTIKEVKDG---RYGAKDQDG-NWNG---- 101

  Fly   304 SMLVDEVAAHSARFAIGDLHLFQVYLKLVELSAPHNFECLT-FLTPESSTDNSWQ-TFILPFSAG 366
              :|.||....|..|:..|.:.....:.:..:.|.....:: .|..:..::||:. .|:.|||..
 Frog   102 --MVGEVLRKEADLAVAPLTITGARERELAFTKPFMQTGISILLRKDDVSENSYLFGFLTPFSKE 164

  Fly   367 MWVGVLLSLFVVGTVFYAISFLNAIINGNVSSEFFRCLRPNRNVPMDPKIYRRISFRIAISRYRS 431
            .|:|:|::..|.....:.:..|:......:|:|     :.|.|                      
 Frog   165 TWIGILVAYVVTSLCLFLVGRLSPCEWTELSTE-----QNNFN---------------------- 202

  Fly   432 SKGDRMPRDLFDGYTNCILLTYSMLLYVALPRMPRNWPLRVLTGWYWIYCILLVATYRASFTAIL 496
                         :.|.:...............|::...|::...:||:.|:|||.|.|||.|.|
 Frog   203 -------------FLNSLWFGVGAFTLQGAEPHPKSVSARIIAVIWWIFSIVLVAAYIASFAAFL 254

  Fly   497 ANPAARVT-IDTLEDLLRSHIPP--STGATENRQFFLEANDEVARKVGEKMEVFGYSDD-LTSRI 557
            .:.:.:.| |.|.|||:......  :..::...|||..:.:...|.:.|.|:  ...|: |....
 Frog   255 NSDSMQTTNIQTFEDLVNQRTLEFGTINSSSTFQFFKNSKNPTYRMIYEYMD--KRKDELLVKSF 317

  Fly   558 AKGQCAYYDNEFYLRYLRVADESGSALHIMKECVLYMPVVLAMEKNSALKPRVDASIQHLAEGGL 622
            |:|             :|...||..|  .:.|.|: ..:::|...:....|::.|...:    |:
 Frog   318 AEG-------------VRRVKESNYA--FLGESVM-QDIMVAKHCDLVRAPQIIAGRGY----GI 362

  Fly   623 IAKWLKDAIEHLPAEALAQQEALMNIQ----KFWSS---------------------FVALLIGY 662
            .|......|:.|....|.|.|: .||:    |:|.:                     |:.|.||.
 Frog   363 AASLDSPLIKPLSVAILEQTES-GNIEYLRKKWWDNTCNMKRSAGWNPVQPHTLGGIFLILGIGL 426

  Fly   663 VISMLTLLAERWHFKHIVMK 682
            .:.::..|.|      :|:|
 Frog   427 ALGVIAALVE------LVLK 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68aNP_648455.2 Lig_chan 429..661 CDD:278489 53/260 (20%)
grik5-like.1NP_001072565.1 PBP2_iGluR_non_NMDA_like 41..396 CDD:270403 88/423 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.