DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir68a and Grik2

DIOPT Version :9

Sequence 1:NP_648455.2 Gene:Ir68a / 39269 FlyBaseID:FBgn0036150 Length:704 Species:Drosophila melanogaster
Sequence 2:NP_062182.1 Gene:Grik2 / 54257 RGDID:2733 Length:908 Species:Rattus norvegicus


Alignment Length:656 Identity:133/656 - (20%)
Similarity:230/656 - (35%) Gaps:185/656 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 IYDRIFFESVGRRVIPFFVMRTNESDDLQRPSRQVELFVKAIKSSDCELNVITILNGWQVQRFLG 129
            :||.:...||..:..|...:.:.:. :..:|.|....|:..||.:.           |  :...|
  Rat   323 MYDAVHVVSVAVQQFPQMTVSSLQC-NRHKPWRFGTRFMSLIKEAH-----------W--EGLTG 373

  Fly   130 YIYDNRSLNMQKKFVLLHDLRLFESDMIHLWSVFIDAIFLKRQLDNKYTISTIAFPGILSGVLVM 194
            .|..|::..::..|.|                   |.|.||.:                    .:
  Rat   374 RITFNKTNGLRTDFDL-------------------DVISLKEE--------------------GL 399

  Fly   195 KNIANWELGKGLN------GRILFADKTSNLFGTSLPVAISEHVPMVLWANATK------SFQGV 247
            :.|..|:...|||      |:.  |:.|.:|...||.|......|.||:..:.|      .|:|.
  Rat   400 EKIGTWDPASGLNMTESQKGKP--ANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGY 462

  Fly   248 EVEIMNALGKALNFKPVYYKPNQTENMDWTELDGGASVAYGSGNPDGYAQNGTHIDSMLVDEVAA 312
            .::::..|...|.|.   |:....|       ||    .||:.:......||      :|.|:..
  Rat   463 CIDLLRELSTILGFT---YEIRLVE-------DG----KYGAQDDVNGQWNG------MVRELID 507

  Fly   313 HSARFAIGDLHLFQVYLKLVELSAPHNFECLTFLT--------PESSTDNSWQTFILPFSAGMWV 369
            |.|..|:..|.:..|..|:::.|.|       |:|        ..:.|:....:|:.|.|..:|:
  Rat   508 HKADLAVAPLAITYVREKVIDFSKP-------FMTLGISILYRKPNGTNPGVFSFLNPLSPDIWM 565

  Fly   370 GVLLSLFVVGTVFYAISFLNAIINGNVSSEFFRCLRPNRNVPMDPKIYRRISFRIAISRYRSSKG 434
            .|||:...|..|.:.|:..:.          :....|:   |.:|                    
  Rat   566 YVLLACLGVSCVLFVIARFSP----------YEWYNPH---PCNP-------------------- 597

  Fly   435 DRMPRDLFDGYTNCILLTYSMLLYVALPR-----MPRNWPLRVLTGWYWIYCILLVATYRASFTA 494
               ..|:.:  .|..||........||.|     ||:....|::.|.:|.:.::::::|.|:..|
  Rat   598 ---DSDVVE--NNFTLLNSFWFGVGALMRQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAA 657

  Fly   495 ILANPAARVTIDTLEDLLRSHIPPSTGATEN---RQFFLEANDEVARKVG--EKMEVFGYSDDLT 554
            .|........||:.:||.: ......||.|:   ..||.::      |:.  :||..|     ::
  Rat   658 FLTVERMESPIDSADDLAK-QTKIEYGAVEDGATMTFFKKS------KISTYDKMWAF-----MS 710

  Fly   555 SRIAKGQCAYYDNEFYLRYLRVAD-----ESGSALHI-MKECVLYMPVVLAMEK--------NSA 605
            ||  :.......||..::.:..:|     ||.:...: .:.|.|.....|...|        .|.
  Rat   711 SR--RQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSP 773

  Fly   606 LKPRVDASIQHLAEGGLI----AKWLKDAIEHLPAEALAQQEALMNIQKFWSSFVALLIGYVISM 666
            .:.::..:|..|.|.|.:    .||.:.  ...|.|...:..|| .:|.....|:.|..|.|:|:
  Rat   774 YRDKITIAILQLQEEGKLHMMKEKWWRG--NGCPEEESKEASAL-GVQNIGGIFIVLAAGLVLSV 835

  Fly   667 LTLLAE 672
            ...:.|
  Rat   836 FVAVGE 841

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir68aNP_648455.2 Lig_chan 429..661 CDD:278489 54/259 (21%)
Grik2NP_062182.1 Periplasmic_Binding_Protein_Type_1 34..414 CDD:299141 25/143 (17%)
ANF_receptor 52..395 CDD:279440 18/104 (17%)
Periplasmic_Binding_Protein_Type_2 430..800 CDD:304360 93/448 (21%)
Glutamate binding. /evidence=ECO:0000269|PubMed:15721240, ECO:0000269|PubMed:17115050, ECO:0007744|PDB:1S50, ECO:0007744|PDB:1S7Y, ECO:0007744|PDB:2I0B, ECO:0007744|PDB:2I0C 516..518 0/1 (0%)
Lig_chan 562..831 CDD:278489 64/323 (20%)