DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir68a and grid2

DIOPT Version :9

Sequence 1:NP_648455.2 Gene:Ir68a / 39269 FlyBaseID:FBgn0036150 Length:704 Species:Drosophila melanogaster
Sequence 2:NP_001004123.1 Gene:grid2 / 448841 ZFINID:ZDB-GENE-040913-1 Length:1009 Species:Danio rerio


Alignment Length:535 Identity:109/535 - (20%)
Similarity:190/535 - (35%) Gaps:147/535 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 MKNIANWELGKGLNGRILFADKTSNLFGTSLPVAISEHVPMVLWA----NATKSFQGVEVEIMNA 254
            :..:|.|:...||||.:......:|:.|..|.|......|.|:.:    ...|.:||..:::::|
Zfish   413 VSRLATWDPIHGLNGTLTDRKLENNMRGVVLRVVTVLEEPFVMVSENVLGKPKKYQGFSIDVLDA 477

  Fly   255 LGKALNFK-PVYYKPNQTENMDWTELDGGASVAYGSGNPDGYAQNGTHIDSMLVDEVAAHSARFA 318
            |...|.|| .:|..|:.               .|||...|| ..||      |:.|:....|...
Zfish   478 LANYLGFKYEIYVAPDH---------------KYGSQQADG-TWNG------LIGELVFKRADVG 520

  Fly   319 IGDLHLFQVYLKLVELSAPHNFECLTFLTPESSTDNSWQTFILPFSAGMWVGVLLSLFVVGTVFY 383
            :..|.:......:|:.:..:....:..|..::.........:.||...:|..:..::.:|||:.|
Zfish   521 LSALTITPERESVVDFTTRYMDYSVGVLLRKAERTVDMFACLAPFDLSLWACIAGTVLLVGTLVY 585

  Fly   384 AISFLN--AIINGNVSSEFFRCLRPNRNVPMDPKIYRRISFRIAISRYRS--SKGDRMPRDLFDG 444
            .:::||  .:..|:|||               ..:|..:.|     .|.|  .:|..:|      
Zfish   586 LLNWLNPPRLPMGSVSS---------------TTLYNSMWF-----VYGSFVQQGGEVP------ 624

  Fly   445 YTNCILLTYSMLLYVALPRMPRNWPLRVLTGWYWIYCILLVATYRASFTAILANPAARVTIDTLE 509
            ||.  |.|                  |::.|.:|::.::::::|.|:..|.|.......:|.:|:
Zfish   625 YTT--LAT------------------RMMMGVWWLFALIVISSYTANLAAFLTISRIENSIQSLQ 669

  Fly   510 DLLRSHIPP-----------------------------------STGATENRQFFLEANDEVARK 539
            ||.:....|                                   .||..||.   :|.:.|..||
Zfish   670 DLAKQTDLPYGTVLDSAVYDQVRSKGMNPFERDPMYSQMWRMINRTGGAENN---VEESKEGIRK 731

  Fly   540 VGEKMEVFGYSDDLTSRIAKGQCAYYDNEFYLRYLRVADESGSALHIMKECVLYMPVVLAMEKNS 604
            |                 ..|:.|:..:...|.|:.:.||..| |:.:...|......:||:..|
Zfish   732 V-----------------KYGRFAFVWDAAVLEYVAINDEDCS-LYTVSNNVADRGYGMAMQHGS 778

  Fly   605 ALKPRVDASIQHLAEGG----LIAKWL-KDAIEHLPAEALA-----QQEALMNIQKFWSSFVALL 659
            ..:......|..|.:.|    |..||. :|:    |.:..:     :..:.::|..|...|..|.
Zfish   779 PYRDIFSQRILELQQNGDMDILKLKWWPRDS----PCDLYSPVGTRKSGSALDIHSFAGVFFVLA 839

  Fly   660 IGYVISMLTLLAERW 674
            .|.|:|.|....|.|
Zfish   840 AGVVLSCLIATVETW 854

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68aNP_648455.2 Lig_chan 429..661 CDD:278489 53/278 (19%)
grid2NP_001004123.1 PBP1_iGluR_delta_2 28..427 CDD:107386 4/13 (31%)
ANF_receptor 42..404 CDD:279440
PBP2_iGluR_delta_2 440..806 CDD:270449 90/454 (20%)
Lig_chan 568..841 CDD:278489 66/343 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 989..1009
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591164
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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