DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir68a and gria4b

DIOPT Version :9

Sequence 1:NP_648455.2 Gene:Ir68a / 39269 FlyBaseID:FBgn0036150 Length:704 Species:Drosophila melanogaster
Sequence 2:NP_997917.2 Gene:gria4b / 336069 ZFINID:ZDB-GENE-030131-8013 Length:904 Species:Danio rerio


Alignment Length:638 Identity:123/638 - (19%)
Similarity:225/638 - (35%) Gaps:192/638 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 NESDDLQRPSRQVEL--------FVKAIKSSDCELNVITI-LNGWQVQRFLGYIYDNRSLNMQKK 142
            |:..|::|..:||.|        |....:..:..::|..: .||   .|.:||      .|...|
Zfish   340 NQGIDMERTLKQVHLQGLTGNVQFDHYGRRVNYTMDVFELKSNG---PRRIGY------WNDADK 395

  Fly   143 FVLLHDLRLFESDMIHLWSVFIDAIFLKRQLDNKYTISTIAFPGILSGVLVMKNIANWELGKGLN 207
            .||..|..|..::              ...::|:..|.|.    |:.|..||.. .|||:.:|  
Zfish   396 LVLTQDHALLPNE--------------TSGMENRTVIVTT----IMEGPYVMLK-KNWEMYEG-- 439

  Fly   208 GRILFADKTSNLFGTSLPVAISEHVPMVLWANATKSFQGVEVEIMNALGKALNFKPVYYKPNQTE 272
                                             .:.::|..|::.:.:.|.:.||   ||.:...
Zfish   440 ---------------------------------NEQYEGYCVDLASEIAKHIGFK---YKISIVP 468

  Fly   273 NMDWTELDGGASVAYGSGNPDGYAQNGTHIDSMLVDEVAAHSARFAIGDLHLFQVYLKLVELSAP 337
                   ||    .||:.:|:....||      :|.|:....|..|:..|.:..|..::::.|.|
Zfish   469 -------DG----KYGARDPETKIWNG------MVGELVYGKAEIAVAPLTITLVREEVIDFSKP 516

  Fly   338 HNFECLTFL--TPESSTDNSWQTFILPFSAGMWVGVLLSLFVVGTVFYAISFLNAIINGNVSSEF 400
            .....::.:  .|:.|....: :|:.|.:..:|:.::.:...|..|.:.:|        ..|...
Zfish   517 FMSLGISIMIKKPQKSKPGVF-SFLDPLAYEIWMCIVFAYIGVSVVLFLVS--------RFSPYE 572

  Fly   401 FRCLRPNRNVPMDPKIYRRISFRIAISRYRSSKGDRMPRDLFDGYTNCILLTYSMLLYVALPRMP 465
            :....|.......|                   .|:.|.:.  |..|.:..:....:.......|
Zfish   573 WHTEEPEEGTDGLP-------------------SDQPPNEF--GIFNSLWFSLGAFMQQGCDISP 616

  Fly   466 RNWPLRVLTGWYWIYCILLVATYRASFTAILANPAARVTIDTLEDLLR----SHIPPSTGATENR 526
            |:...|::.|.:|.:.::::::|.|:..|.|........|::.|||.:    ::....:|:|  :
Zfish   617 RSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTDIAYGTLDSGST--K 679

  Fly   527 QFFLEANDEVARKVGEKMEVFGYSDDLT------------SRIAKGQCAYYDNEFYLRY------ 573
            :||  ...::|  |.|||..:..|.:.|            .|.:||:.|:........|      
Zfish   680 EFF--RRSKIA--VYEKMWSYMKSAEPTVFTKTTAEGVARVRKSKGKYAFLLESTMNEYTEQRKP 740

  Fly   574 ---LRVA---DESGSALHIMKECVLYMPVVLAMEKNSALKPRVDASIQHLAEGGLI----AKWLK 628
               ::|.   |..|..              :|..|.|.|:..|:.::..|.|.||:    .||..
Zfish   741 CDTMKVGGNLDSKGYG--------------VATPKGSQLRSAVNLAVLKLNEQGLLDKLKNKWWY 791

  Fly   629 DAIE---------HLPAEALAQQEALMNIQKFWSSFVALLIGYVISMLTLLAE 672
            |..|         ...::||    :|.|:.   ..|..|:.|..::||..|.|
Zfish   792 DKGECGSGGGGEKDKSSQAL----SLSNVA---GVFYILVGGLGLAMLVALIE 837

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68aNP_648455.2 Lig_chan 429..661 CDD:278489 55/272 (20%)
gria4bNP_997917.2 Periplasmic_Binding_Protein_Type_1 28..398 CDD:324556 15/66 (23%)
PBP2_iGluR_AMPA_GluR4 414..793 CDD:270445 91/488 (19%)
Lig_chan 546..827 CDD:306551 62/336 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591169
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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