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Protein Alignment Ir68a and Gria3

DIOPT Version :9

Sequence 1:	NP_648455.2	Gene:	Ir68a / 39269	FlyBaseID:	FBgn0036150	Length:	704	Species:	Drosophila melanogaster
Sequence 2:	NP_001106213.1	Gene:	Gria3 / 29628	RGDID:	70958	Length:	888	Species:	Rattus norvegicus

Alignment Length:	496	Identity:	101/496 - (20%)
Similarity:	190/496 - (38%)	Gaps:	103/496 - (20%)

- Green bases have known domain annotations that are detailed below.

  Fly   214 DKTSNLFGTSLPVAISEHVPMVLWANATKSFQGVE------VEIMNALGKALNFKPVYYKPNQTE 272
            |.:|:...|.:...|.|. |.|::....:..:|.|      |::...:.|.:..|   ||.:...
  Rat   410 DSSSSENRTIVVTTILES-PYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIK---YKLSIVG 470

  Fly   273 NMDWTELDGGASVAYGSGNPDGYAQNGTHIDSMLVDEVAAHSARFAIGDLHLFQVYLKLVELSAP 337
                   ||    .||:.:|:....||      :|.|:....|..|:..|.:..|..::::.|.|
  Rat   471 -------DG----KYGARDPETKIWNG------MVGELVYGRADIAVAPLTITLVREEVIDFSKP 518

  Fly   338 HNFECLTFL--TPESSTDNSWQTFILPFSAGMWVGVLLSLFVVGTVFYAISFLNAIINGNVSSEF 400
            .....::.:  .|:.|....: :|:.|.:..:|:.::.:...|..|.:.:|..         |.:
  Rat   519 FMSLGISIMIKKPQKSKPGVF-SFLDPLAYEIWMCIVFAYIGVSVVLFLVSRF---------SPY 573

  Fly   401 FRCLRPNRNVPMDPKIYRRISFRIAISRYRSSKGDRMPRDLFDGYTNCILLTYSMLLYVALPRMP 465
            ...|..|...|.||:                |..|  |.:.| |..|.:..:....:.......|
  Rat   574 EWHLEDNNEEPRDPQ----------------SPPD--PPNEF-GIFNSLWFSLGAFMQQGCDISP 619

  Fly   466 RNWPLRVLTGWYWIYCILLVATYRASFTAILANPAARVTIDTLEDLLR-SHIPPST---GATENR 526
            |:...|::.|.:|.:.::::::|.|:..|.|........|::.|||.: :.|...|   |:|  :
  Rat   620 RSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGST--K 682

  Fly   527 QFFLEANDEVARKVGEKME-----VFGYSD-DLTSRI--AKGQCAYYDNEFYLRYLRV------- 576
            :||..:...|..|:...|:     ||..:. |..:|:  :||:.|:........|:..
  Rat   683 EFFRRSKIAVYEKMWSYMKSAEPSVFTKTTADGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTM 747

  Fly   577 -----ADESGSALHIMKECVLYMPVVLAMEKNSALKPRVDASIQHLAEGGLI----AKWLKDAIE 632
                 .|..|..              :|..|.|||...|:.::..|.|.||:    .||..|..|
  Rat   748 KVGGNLDSKGYG--------------VATPKGSALGNAVNLAVLKLNEQGLLDKLKNKWWYDKGE 798

  Fly   633 HLPAEALAQQE-ALMNIQKFWSSFVALLIGYVISMLTLLAE 672
            .......::.: :.:::......|..|:.|..::|:..|.|
  Rat   799 CGSGGGDSKDKTSALSLSNVAGVFYILVGGLGLAMMVALIE 839

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.