DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir68a and Gria2

DIOPT Version :9

Sequence 1:NP_648455.2 Gene:Ir68a / 39269 FlyBaseID:FBgn0036150 Length:704 Species:Drosophila melanogaster
Sequence 2:NP_001077280.1 Gene:Gria2 / 29627 RGDID:61862 Length:883 Species:Rattus norvegicus


Alignment Length:749 Identity:144/749 - (19%)
Similarity:252/749 - (33%) Gaps:227/749 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 DLQ-RPSRQVELFVKAIKSSDCELNVITILNGWQVQRFLGYIY--------DNRSLNMQKKFVLL 146
            ||: :..|:|.|..:..|.:|....||||  |..|:   ||.|        |...|.:|.....:
  Rat   198 DLELKKERRVILDCERDKVNDIVDQVITI--GKHVK---GYHYIIANLGFTDGDLLKIQFGGANV 257

  Fly   147 HDLRLFESD------MIHLWSVFIDAIFLKRQLDNKYTISTIAFPGILS--GVLVMKN------- 196
            ...::.:.|      .|..||...:     ::....:| :||.:...|:  .|.||..       
  Rat   258 SGFQIVDYDDSLVSKFIERWSTLEE-----KEYPGAHT-ATIKYTSALTYDAVQVMTEAFRNLRK 316

  Fly   197 --------------IAN----WELG------------KGLNGRILF------------------- 212
                          :||    |..|            :||:|.|.|                   
  Rat   317 QRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTN 381

  Fly   213 ----------ADK-------------TSNLFGTSLPVAISEHVPMVL------WANATKSFQGVE 248
                      .||             ||.|...::.|......|.|:      .....:.::|..
  Rat   382 GPRKIGYWSEVDKMVVTLTELPSGNDTSGLENKTVVVTTILESPYVMMKKNHEMLEGNERYEGYC 446

  Fly   249 VEIMNALGKALNFKPVYYKPNQTENMDWTELDGGASVAYGSGNPDGYAQNGTHIDSMLVDEVAAH 313
            |::...:.|...||   ||        .|.:..|   .||:.:.|....||      :|.|:...
  Rat   447 VDLAAEIAKHCGFK---YK--------LTIVGDG---KYGARDADTKIWNG------MVGELVYG 491

  Fly   314 SARFAIGDLHLFQVYLKLVELSAPHNFECLTFL--TPESSTDNSWQTFILPFSAGMWVGVLLSLF 376
            .|..||..|.:..|..::::.|.|.....::.:  .|:.|....: :|:.|.:..:|:.::.:..
  Rat   492 KADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVF-SFLDPLAYEIWMCIVFAYI 555

  Fly   377 VVGTVFYAISFLNAIINGNVSSEFFRCLRPNRNVPMDPKIYRRISFRIAISRYRSSKGDRMPRDL 441
            .|..|.:.:|                        ...|..:....|...    |.::......:.
  Rat   556 GVSVVLFLVS------------------------RFSPYEWHTEEFEDG----RETQSSESTNEF 592

  Fly   442 FDGYTNCILLTYSMLLYVALPRMPRNWPLRVLTGWYWIYCILLVATYRASFTAILANPAARVTID 506
              |..|.:..:....:.......||:...|::.|.:|.:.::::::|.|:..|.|........|:
  Rat   593 --GIFNSLWFSLGAFMRQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIE 655

  Fly   507 TLEDLLR-SHIPPST---GATENRQFFLEANDEVARKVGEKMEVFGYSDD------------LTS 555
            :.|||.: :.|...|   |:|  ::||  ...::|  |.:||..:..|.:            ...
  Rat   656 SAEDLSKQTEIAYGTLDSGST--KEFF--RRSKIA--VFDKMWTYMRSAEPSVFVRTTAEGVARV 714

  Fly   556 RIAKGQCAYYDNEFYLRYLRV------------ADESGSALHIMKECVLYMPVVLAMEKNSALKP 608
            |.:||:.||........|:..            .|..|..              :|..|.|:|..
  Rat   715 RKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYG--------------IATPKGSSLGN 765

  Fly   609 RVDASIQHLAEGGLI----AKWLKDAIEHLPAEALAQQE-ALMNIQKFWSSFVALLIGYVISMLT 668
            .|:.::..|.|.||:    .||..|..|.......:::: :.:::......|..|:.|..::||.
  Rat   766 AVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGDSKEKTSALSLSNVAGVFYILVGGLGLAMLV 830

  Fly   669 LLAE-----RWHFKHI-VMKHPMYDVYNPSLYYN 696
            .|.|     |...|.: |.|:|..  .|||...|
  Rat   831 ALIEFCYKSRAEAKRMKVAKNPQN--INPSSSQN 862

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir68aNP_648455.2 Lig_chan 429..661 CDD:278489 50/264 (19%)
Gria2NP_001077280.1 PBP1_iGluR_AMPA_GluR2 28..397 CDD:107384 41/209 (20%)
ANF_receptor 56..379 CDD:279440 39/191 (20%)
PBP2_iGluR_AMPA 413..794 CDD:270433 83/451 (18%)
Glutamate binding 499..501 0/1 (0%)
Lig_chan 545..824 CDD:278489 56/328 (17%)