DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir68a and GRIN2C

DIOPT Version :9

Sequence 1:NP_648455.2 Gene:Ir68a / 39269 FlyBaseID:FBgn0036150 Length:704 Species:Drosophila melanogaster
Sequence 2:XP_016880033.1 Gene:GRIN2C / 2905 HGNCID:4587 Length:1337 Species:Homo sapiens


Alignment Length:604 Identity:112/604 - (18%)
Similarity:207/604 - (34%) Gaps:158/604 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   191 VLVMKNIANWEL-GKGLNGRILFADKTSNLFGTSL-PVAISEHVPMVLWANAT---KSFQGVEVE 250
            |:.:.....||: |:..:|.:.........:..|| ||..|.|:.:     ||   :.|..||..
Human   435 VIALNRHRLWEMVGRWEHGVLYMKYPVWPRYSASLQPVVDSRHLTV-----ATLEERPFVIVESP 494

  Fly   251 IMNALGKALNFKPVYYKPNQTENMDWTELDGGASVAYGSGNPDGYAQ------------------ 297
            .....|...|..|...:.|.|               :.||:...|.:                  
Human   495 DPGTGGCVPNTVPCRRQSNHT---------------FSSGDVAPYTKLCCKGFCIDILKKLARVV 544

  Fly   298 ----------NGTH------IDSMLVDEVAAHSARFAIGDLHLFQVYLKLVELSAPHNFECLTFL 346
                      ||.|      :.:.::.||....|..|||.|.:.:...::|:.|.|.....::.:
Human   545 KFSYDLYLVTNGKHGKRVRGVWNGMIGEVYYKRADMAIGSLTINEERSEIVDFSVPFVETGISVM 609

  Fly   347 TPESSTDNSWQTFILPFSAGMWVGVLLSLFVVGTVFYAISFLNAIINGNVSSEFFRCLRPNRNVP 411
            ...|:...|...|:.|:|..:||    .:||:.....||:..        ..|:|..:..|:|  
Human   610 VARSNGTVSPSAFLEPYSPAVWV----MMFVMCLTVVAITVF--------MFEYFSPVSYNQN-- 660

  Fly   412 MDPKIYRRISFRIAISRYRSSKGDRMPRDLFDGYT--NCILLTYSMLLYVALP-RMPRNWPLRVL 473
                          ::|.:.|.|        ..:|  ..:.|.::::...::| ..||....:::
Human   661 --------------LTRGKKSGG--------PAFTIGKSVWLLWALVFNNSVPIENPRGTTSKIM 703

  Fly   474 TGWYWIYCILLVATYRASFTAILANPAARVTIDTLEDLLRSHI---------------------- 516
            ...:..:.::.:|:|.|:..|.:.......|:..|.|....|:                      
Human   704 VLVWAFFAVIFLASYTANLAAFMIQEQYIDTVSGLSDKKSLHLENTGVAWTAFKTFCSDYFQRPQ 768

  Fly   517 ---PP------STGATEN--RQFFLEANDEVARKVGEKMEVFGYSDDLTS--------RIAKGQC 562
               ||      ..|:||.  |..:.:.:..:.:.....:|     |.|||        .:.:...
Human   769 DQYPPFRFGTVPNGSTERNIRSNYRDMHTHMVKFNQRSVE-----DALTSLKMGSEAQPVPRKLD 828

  Fly   563 AYYDNEFYLRYLRVADESGSALHIMKECVLYMP-VVLAMEKNSALKPRVD-ASIQHLAEG---GL 622
            |:..:...|.|:...||....:.|....|.... ..:||:|:|..|..:| |.:|.|.:|   .|
Human   829 AFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIAMQKDSHWKRAIDLALLQFLGDGETQKL 893

  Fly   623 IAKWLKDAIEHLPAEALAQQEALMNIQKFWSSFVALLIGYVISMLTLLAER---WHFKHIVMKHP 684
            ...||....::...|.::.:   ::|......|..||:...:::|....|.   |..:|.|....
Human   894 ETVWLSGICQNEKNEVMSSK---LDIDNMAGVFYMLLVAMGLALLVFAWEHLVYWKLRHSVPNSS 955

  Fly   685 MYD---VYNPSLYYNFKRI 700
            ..|   .::..:|..|..:
Human   956 QLDFLLAFSRGIYSCFSGV 974

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68aNP_648455.2 Lig_chan 429..661 CDD:278489 51/280 (18%)
GRIN2CXP_016880033.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165155888
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.740

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