DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir68a and GRIK2

DIOPT Version :9

Sequence 1:NP_648455.2 Gene:Ir68a / 39269 FlyBaseID:FBgn0036150 Length:704 Species:Drosophila melanogaster
Sequence 2:NP_068775.1 Gene:GRIK2 / 2898 HGNCID:4580 Length:908 Species:Homo sapiens


Alignment Length:654 Identity:129/654 - (19%)
Similarity:229/654 - (35%) Gaps:181/654 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 IYDRIFFESVGRRVIPFFVMRTNESDDLQRPSRQVELFVKAIKSSDCELNVITILNGWQVQRFLG 129
            :||.:...||..:..|...:.:.:. :..:|.|....|:..||.:.           |  :...|
Human   323 MYDAVHVVSVAVQQFPQMTVSSLQC-NRHKPWRFGTRFMSLIKEAH-----------W--EGLTG 373

  Fly   130 YIYDNRSLNMQKKFVLLHDLRLFESDMIHLWSVFIDAIFLKRQLDNKYTISTIAFPGILSGVLVM 194
            .|..|::..::..|.|                   |.|.||.:                    .:
Human   374 RITFNKTNGLRTDFDL-------------------DVISLKEE--------------------GL 399

  Fly   195 KNIANWELGKGLN------GRILFADKTSNLFGTSLPVAISEHVPMVLWANATK------SFQGV 247
            :.|..|:...|||      |:.  |:.|.:|...||.|......|.||:..:.|      .|:|.
Human   400 EKIGTWDPASGLNMTESQKGKP--ANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGY 462

  Fly   248 EVEIMNALGKALNFKPVYYKPNQTENMDWTELDGGASVAYGSGNPDGYAQNGTHIDSMLVDEVAA 312
            .::::..|...|.|.   |:....|       ||    .||:.:......||      :|.|:..
Human   463 CIDLLRELSTILGFT---YEIRLVE-------DG----KYGAQDDANGQWNG------MVRELID 507

  Fly   313 HSARFAIGDLHLFQVYLKLVELSAPHNFECLTFLT--------PESSTDNSWQTFILPFSAGMWV 369
            |.|..|:..|.:..|..|:::.|.|       |:|        ..:.|:....:|:.|.|..:|:
Human   508 HKADLAVAPLAITYVREKVIDFSKP-------FMTLGISILYRKPNGTNPGVFSFLNPLSPDIWM 565

  Fly   370 GVLLSLFVVGTVFYAISFLNAIINGNVSSEFFRCLRPNRNVPMDPKIYRRISFRIAISRYRSSKG 434
            .:||:...|..|.:.|:..:.          :....|:   |.:|                    
Human   566 YILLAYLGVSCVLFVIARFSP----------YEWYNPH---PCNP-------------------- 597

  Fly   435 DRMPRDLFD-GYT--NCILLTYSMLLYVALPRMPRNWPLRVLTGWYWIYCILLVATYRASFTAIL 496
               ..|:.: .:|  |........|:......||:....|::.|.:|.:.::::::|.|:..|.|
Human   598 ---DSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFL 659

  Fly   497 ANPAARVTIDTLEDLLRSHIPPSTGATEN---RQFFLEANDEVARKVG--EKMEVFGYSDDLTSR 556
            ........||:.:||.: ......||.|:   ..||.::      |:.  :||..|     ::||
Human   660 TVERMESPIDSADDLAK-QTKIEYGAVEDGATMTFFKKS------KISTYDKMWAF-----MSSR 712

  Fly   557 IAKGQCAYYDNEFYLRYLRVAD-----ESGSALHI-MKECVLYMPVVLAMEK--------NSALK 607
              :.......||..::.:..:|     ||.:...: .:.|.|.....|...|        .|..:
Human   713 --RQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYR 775

  Fly   608 PRVDASIQHLAEGGLI----AKWLKDAIEHLPAEALAQQEALMNIQKFWSSFVALLIGYVISMLT 668
            .::..:|..|.|.|.:    .||.:.  ...|.|...:..|| .:|.....|:.|..|.|:|:..
Human   776 DKITIAILQLQEEGKLHMMKEKWWRG--NGCPEEESKEASAL-GVQNIGGIFIVLAAGLVLSVFV 837

  Fly   669 LLAE 672
            .:.|
Human   838 AVGE 841

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir68aNP_648455.2 Lig_chan 429..661 CDD:278489 51/257 (20%)
GRIK2NP_068775.1 PBP1_iGluR_Kainate 37..414 CDD:380605 25/143 (17%)
Periplasmic_Binding_Protein_Type_2 430..800 CDD:419667 89/446 (20%)
Glutamate binding. /evidence=ECO:0000250|UniProtKB:P42260 516..518 0/1 (0%)