DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir68a and Grin3a

DIOPT Version :9

Sequence 1:NP_648455.2 Gene:Ir68a / 39269 FlyBaseID:FBgn0036150 Length:704 Species:Drosophila melanogaster
Sequence 2:NP_612555.1 Gene:Grin3a / 191573 RGDID:621704 Length:1135 Species:Rattus norvegicus


Alignment Length:787 Identity:138/787 - (17%)
Similarity:270/787 - (34%) Gaps:228/787 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 IVAFISLAMATSIPIPIANPAP---LSGYEMQLKILLQKILWVANVKRCFAVITDDLHYPIYDRI 69
            :::|:.:.|..     |.|..|   :.|.:|      ..|..:..:...|.:...:||:.:.|..
  Rat   307 LLSFLQVQMDN-----IRNSTPTMVMFGCDM------DSIRQIFEMSTQFGLSPPELHWVLGDSQ 360

  Fly    70 FFESVGRRVIPFFVM---RTNESDDLQRPSRQVELFVKAIKSS--------------DC-ELNVI 116
            ..|.:....:|..::   :|.:|.........:||..:|:.::              :| ::...
  Rat   361 NVEELRTEGLPLGLIAHGKTTQSVFEYYVQDAMELVARAVATATMIQPELALLPSTMNCMDVKTT 425

  Fly   117 TILNGWQVQRFLG---YIYDNRSLNMQKKFVLLHDLRLFESDMIH------LWS---------VF 163
            .:.:|..:.|||.   :...:.|:.::...::..:...|..::.|      :|:         :.
  Rat   426 NLTSGQYLSRFLANTTFRGLSGSIKVKGSTIISSENNFFIWNLQHDPMGKPMWTRLGSWQGGRIV 490

  Fly   164 IDAIFLKRQLDNKYT------------ISTIAFPGIL-----------SGVLVMKNIANWELGKG 205
            :|:.....|.....|            ::.|..|.:.           :|.|.:..:.|   ...
  Rat   491 MDSGIWPEQAQRHKTHFQHPNKLHLRVVTLIEHPFVFTREVDDEGLCPAGQLCLDPMTN---DSS 552

  Fly   206 LNGRILFADKTSNLFGTSLPVAISEHVPMVLWANATKSFQGVEVEIMNALGKALNFKPVYYKPNQ 270
            :..|:..:..:||   .::|:...            |...|..::::..|.:.:||         
  Rat   553 MLDRLFSSLHSSN---DTVPIKFK------------KCCYGYCIDLLEQLAEDMNF--------- 593

  Fly   271 TENMDWTELDGGASVAYGSGNPDGYAQNGTHIDSMLVDEVAAHSARFAIGDLHLFQVYLKLVELS 335
              :.|...:..|...|:.:|:..|           ||.::.:.:|..|:....:.....::::.:
  Rat   594 --DFDLYIVGDGKYGAWKNGHWTG-----------LVGDLLSGTANMAVTSFSINTARSQVIDFT 645

  Fly   336 APHNFECLTFLTPESSTDNSWQTFILPFSAGMWVGVLLSLFVVG---TVFYAISFLNAIINGNVS 397
            :|.....|..|.....|......|:.|....||:|:.::|.:..   |::...|.......|.  
  Rat   646 SPFFSTSLGILVRTRDTAAPIGAFMWPLHWTMWLGIFVALHITAIFLTLYEWKSPFGMTPKGR-- 708

  Fly   398 SEFFRCLRPNRNVPMDPKIYRRISFRIAISRYRSSKGDRMPRDLFDGYTNCILLTYSMLL-YVAL 461
                     |||     |::   ||..|::                       :.|::|. ..|.
  Rat   709 ---------NRN-----KVF---SFSSALN-----------------------VCYALLFGRTAA 733

  Fly   462 PRMPRNWPLRVLTGWYWIYCILLVATYRASFTAILANPAARVTIDTLEDLLRSHIPPSTG----- 521
            .:.|:.|..|.|...:.|:|:..::||.|:..|::........:..:.|....|  ||.|     
  Rat   734 IKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEKIYEELSGIHDPKLHH--PSQGFRFGT 796

  Fly   522 ----ATEN--RQFFLEANDEVARKVGEKMEVFGYSDDLTSRIAKGQCAYYDNEFYLRYLRVADES 580
                :.|:  ||.|.|.::.:.|          |:...|.          |.   ::||:...|.
  Rat   797 VRESSAEDYVRQSFPEMHEYMRR----------YNVPATP----------DG---VQYLKNDPEK 838

  Fly   581 GSALHIMKECVLYMPVV--------------------LAMEKNSALKPRVDASIQHLAEGG---- 621
            ..|. ||.:.:|...|.                    :.:..||.|...:...|......|    
  Rat   839 LDAF-IMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDV 902

  Fly   622 LIAKWLKDAIEHLPAEALAQQEAL-MNIQKFWSSFVALLIGYVISMLTLLAERWHFKHIVMKHPM 685
            |..||.|  :......:.|..|.| |.|:.|...||.|.||:.:|:||.:.|     |||.:..:
  Rat   903 LHDKWYK--VVPCGKRSFAVTETLQMGIKHFSGLFVLLCIGFGLSILTTIGE-----HIVHRLLL 960

  Fly   686 YDVYNPS 692
            ..:.|.|
  Rat   961 PRIKNKS 967

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68aNP_648455.2 Lig_chan 429..661 CDD:278489 53/268 (20%)
Grin3aNP_612555.1 PBP1_iGluR_NMDA_NR3 30..497 CDD:107372 29/200 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 60..117
ANF_receptor 127..469 CDD:279440 26/172 (15%)
PBP2_iGluR_NMDA_Nr3 512..908 CDD:270438 85/503 (17%)
Lig_chan 676..942 CDD:278489 68/335 (20%)
PPP2CB binding site 951..987 6/22 (27%)
GIT1-binding. /evidence=ECO:0000269|PubMed:24297929 1082..1115
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349792
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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