DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir68a and glr-8

DIOPT Version :9

Sequence 1:NP_648455.2 Gene:Ir68a / 39269 FlyBaseID:FBgn0036150 Length:704 Species:Drosophila melanogaster
Sequence 2:NP_001368711.1 Gene:glr-8 / 180924 WormBaseID:WBGene00001619 Length:547 Species:Caenorhabditis elegans


Alignment Length:561 Identity:105/561 - (18%)
Similarity:199/561 - (35%) Gaps:140/561 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   180 STIAFPGILSGVLVMKNIANWELGKGLNGRILFADKTS--NLFGTSLPVAISEHV---------- 232
            :|.|.|   :.:..:.||.     :.:|.::....:||  :.:|.:..::..:|.          
 Worm     8 NTTADP---NSIRTLNNIL-----ESINEKVAHPPQTSLTSDYGDAYTLSNEKHFSLSEMKGRTL 64

  Fly   233 ---------PMVLWAN------ATKSF-QGVEVEIMNALGKALNFKPVYYKPNQTENMDWTE-LD 280
                     |.|.:.|      ..|.: .||.:||:..:||.||   :.|:........|.| |:
 Worm    65 KMVVPAIEPPYVNYVNFSDAAVTDKGYGPGVVMEILKEIGKRLN---LTYEILPALGSTWGEYLN 126

  Fly   281 GGASVAYGS---GNPDGYAQNGTHIDSMLVDEVAAHSARFAIGDLHLFQVYLKLVELSAPHNFE- 341
            |..:.|:|.   |..|           :|.........|..|.|            |:.|..|| 
 Worm   127 GSWTGAFGQLVRGEVD-----------LLAGGAIMEYDRSVIAD------------LTYPFQFEP 168

  Fly   342 -CLTFLTPESSTDNSWQTFILPFSAGMWVGVLLSLFVVGTVFYAISFLNAIINGNVSSEFFRCLR 405
             .:...:||...|::......|||..:||.....:.:.|.:|..::                   
 Worm   169 TGIMIRSPEKYEDDTLLIVTEPFSWEVWVITAAVILISGVIFLVMT------------------- 214

  Fly   406 PNRNVPMDPKIYRRISFRIAISRYRSSKGDRMPRDLFDGYTNCILLTYSMLLYVALPRMPRNWPL 470
                     .|.|::...:.::.:.|                 |.:.:|:.:...||..||:|..
 Worm   215 ---------NIIRKVYEEMTVTPFES-----------------IWVFFSIFVQQGLPEQPRSWSC 253

  Fly   471 RVLTGWYWIYCILLVATYRASFTAILANPAARVTIDTLEDLLR------SHIPPSTGATENRQFF 529
            |||...:|:..|.|.||:..|..|:.|.....|....::.|:|      ..|.....:....:..
 Worm   254 RVLVALWWLASITLSATFTGSLVALFAVDKTNVPFQNIDQLVRLVKQGKFEIVMDENSFTRTEMI 318

  Fly   530 LEANDEVARKVGEKMEVFGYSDDLTSRIAKGQCAYYDNEFYLRYLRVADESGSALHIMKEC--VL 592
            ..:...|.|.:..:| :..:.....:.||:|......|..|.....:|..:   .:...:|  :|
 Worm   319 ARSKLPVYRDLWHEM-IVNHKVKYVNGIARGVAFVRANPGYALLGPMATLN---FYAYSDCKVIL 379

  Fly   593 Y----MPVVLA--MEKNSALKPRVDASIQHLAEGGLIAKWLKDAIEHLPAEALAQ-------QEA 644
            :    :||.|:  :.|||...|.....|:.:.|.|...||:.|...::..:.:.:       .::
 Worm   380 FNDGILPVYLSIPLVKNSIYSPYFSTKIREMVERGFTQKWIADYRSYVAMQKINECNSTTIGPKS 444

  Fly   645 LMNIQKFWSSFVALLIGYVISMLTLLAE--RWHFKHIVMKH 683
            .:::::...:|...|.|..:.:...:.|  ...|:..:.||
 Worm   445 YLDLKRAQGAFWVFLGGAGLGLALFVGEFIFKFFREKMTKH 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68aNP_648455.2 Lig_chan 429..661 CDD:278489 49/252 (19%)
glr-8NP_001368711.1 PBP2_iGluR_ligand_binding 62..424 CDD:270219 88/436 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR42643
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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