DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir68a and Grin3b

DIOPT Version :10

Sequence 1:NP_648455.2 Gene:Ir68a / 39269 FlyBaseID:FBgn0036150 Length:704 Species:Drosophila melanogaster
Sequence 2:XP_006513350.1 Gene:Grin3b / 170483 MGIID:2150393 Length:1138 Species:Mus musculus


Alignment Length:444 Identity:93/444 - (20%)
Similarity:146/444 - (32%) Gaps:130/444 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   306 LVDEVAAHSARFAIGDLHLFQVYLKLVELSAPHNFECLTFLTPESSTDNSWQTFILPFSAGMWVG 370
            ||.::.|..|..|:....:.....::|:.::|.....|..:.....|.:....|:.|....||||
Mouse   596 LVGDLLAGRAHMAVTSFSINSARSQVVDFTSPFFSTSLGIMVRTRDTASPIGAFMWPLHWSMWVG 660

  Fly   371 V-----LLSLFVV-----------------GTVFYAISFLNAIINGNVSSEFFRCLRPNRNVPMD 413
            |     |.:||:.                 ||||...|.||                        
Mouse   661 VFAALHLTALFLTLYEWRSPYGLTPRGRNRGTVFSYSSALN------------------------ 701

  Fly   414 PKIYRRISFRIAISRYRSSKGDRMPRDLFDGYTNCILLTYSMLLYVALPRMPRNWPLRVLTGWYW 478
                  :.:.|...|..|||                           .|:.|..   |.|...:.
Mouse   702 ------LCYAILFGRTVSSK---------------------------TPKCPTG---RFLMNLWA 730

  Fly   479 IYCILLVATYRASFTAILANPAARVTIDTLEDLLRSHIP----PSTGA------TENRQFFLEAN 533
            |:|:|::::|.|:..|::      |...|.|:|...|.|    ||.|.      ..:.:.:::|:
Mouse   731 IFCLLVLSSYTANLAAVM------VGDKTFEELSGIHDPKLHHPSQGFRFGTVWESSAEAYIKAS 789

  Fly   534 -DEV---ARKVGEKMEVFGYSDDLTSRIAKGQCAYYDNEFYLRYLRVADESGSALHIMKECVL-- 592
             .|:   .|:........|.: .|||...|.. |:..::..|.|....|.....|.:.|...:  
Mouse   790 FPEMHAHMRRHSAPTTPHGVA-MLTSDPPKLN-AFIMDKSLLDYEVSIDADCKLLTVGKPFAIEG 852

  Fly   593 YMPVVLAMEKNSALKPRVDASIQHLAEGGLI----AKWLKDAIEHLPA--EALAQQEAL-MNIQK 650
            |   .:.:.:||.|...:...|......|.|    .||.|    .:|.  ...|..|.| |.:..
Mouse   853 Y---GIGLPQNSPLTSNLSEFISRYKSSGFIDLLHDKWYK----MVPCGKRVFAVTETLQMGVYH 910

  Fly   651 FWSSFVALLIGYVISMLTLLAERWHFKHIVMKHPMYDVYNPSLYYNFKRIYPQH 704
            ....||.|.:|...::||.|.|          |..|.:..|.:....|..|..|
Mouse   911 LSGLFVLLCLGLGSALLTSLGE----------HVFYRLVLPRIRRGNKLQYWLH 954

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68aNP_648455.2 Lig_chan 367..661 CDD:459656 71/338 (21%)
Grin3bXP_006513350.1 PBP1_iGluR_NMDA_NR3 141..481 CDD:380600
PBP2_iGluR_NMDA_Nr3 494..888 CDD:270438 72/362 (20%)
Lig_chan 654..921 CDD:459656 71/341 (21%)
Blue background indicates that the domain is not in the aligned region.

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