DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir68a and gria3a

DIOPT Version :9

Sequence 1:NP_648455.2 Gene:Ir68a / 39269 FlyBaseID:FBgn0036150 Length:704 Species:Drosophila melanogaster
Sequence 2:XP_005165152.1 Gene:gria3a / 170452 ZFINID:ZDB-GENE-020125-5 Length:903 Species:Danio rerio


Alignment Length:715 Identity:143/715 - (20%)
Similarity:255/715 - (35%) Gaps:200/715 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 QKILWVANVKRCFAVITDDLHYPIYD--RIFFESVGRRVIPFFVMRTNESDDLQRPSRQVELFVK 104
            :|.:::.:..|.|:::...:...:.:  ::...|||..|.|....|..|..|    .||.:.|: 
Zfish   152 EKFVYLYDTDRGFSILQAIMESAVMNNWQVTARSVGNIVDPLEYRRIIEEMD----RRQEKRFL- 211

  Fly   105 AIKSSDCELNVI-TILNGWQV----QRFLGYIYDNRSL---NMQKKFVLLHDLRLFESDMIHLWS 161
                .|||:..| :||.  ||    :...||.|...:|   ||....|......:....:|:..|
Zfish   212 ----IDCEVERINSILE--QVVIAGKNSRGYHYILANLGFTNMSLDKVFSGGANITGFQIINPDS 270

  Fly   162 VFIDAIFLKR--QLDN-----------KYTISTIAFPGIL---------------------SGVL 192
            ..:.. ||:|  :||.           ||| |.:....||                     :|..
Zfish   271 PIVQQ-FLQRWERLDEREFPESRSSPLKYT-SALTHDAILVIAEAFRYLRRQRVDISRRGSAGDC 333

  Fly   193 VMKNIANWELG------------KGLNGRILFADKTSNLFG--TSLPVAISEHVP-----MVLWA 238
            :......|..|            :|:.|.|.|     :.||  ::..|.:.|..|     :..|.
Zfish   334 LANPAVPWSQGIDIERALKMVQVQGMTGNIQF-----DSFGRRSNYTVDVYEMKPGGARKIGYWN 393

  Fly   239 NATKSFQGVEVEIMNALGKALN----------FKPVYYKPN--QTENMDWTE---LDGGASVA-- 286
            ...|....||.::.|......|          ...|.||.|  |.|..|..|   :|..:.:|  
Zfish   394 EFEKFVYIVEQQVTNESSSVENRTIVVTTIMEAPYVMYKRNYMQLEGNDRYEGYCVDLASEIAKH 458

  Fly   287 --------------YGSGNPDGYAQNGTHIDSMLVDEVAAHSARFAIGDLHLFQVYLKLVELSAP 337
                          ||:.:|:....||      :|.|:....|..|:..|.:..|..::::.|.|
Zfish   459 VGIKYKLSIVADGKYGARDPETKTWNG------MVGELVYGRADIAVAPLTITLVREEVIDFSKP 517

  Fly   338 HNFECLTFL--TPESSTDNSWQTFILPFSAGMWVGVLLSLFVVGTVFYAISFLNAI---INGNVS 397
            .....::.:  .|:.|....: :|:.|.:..:|:.::.:...|..|.:.:|..:..   ::.|..
Zfish   518 FMSLGISIMIKKPQKSKPGVF-SFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHLDDNEE 581

  Fly   398 SEFFRCLRPNRNVPMDPKIYRRISFRIAISRYRSSKGDRMPRDLFDGYTNCILLTYSMLLYVALP 462
            ::       :...|.||                       |.|.  |..|.:..:....:.....
Zfish   582 TK-------DPQTPPDP-----------------------PNDF--GIFNSLWFSLGAFMQQGCD 614

  Fly   463 RMPRNWPLRVLTGWYWIYCILLVATYRASFTAILANPAARVTIDTLEDLLR-SHIPPST---GAT 523
            ..||:...|::.|.:|.:.::::::|.|:..|.|........|::.|||.: :.|...|   |:|
Zfish   615 ISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGST 679

  Fly   524 ENRQFFLEANDEVARKVGEKME-----VF-GYSDDLTSRI--AKGQCAYYDNEFYLRYLRV---- 576
              ::||..:...|..|:...|:     || ..:.|..:|:  :||:.|:........|:..    
Zfish   680 --KEFFRRSKIAVYEKMWSYMKSAEPSVFVKTTPDGVARVRKSKGKFAFLLESTMNEYIEQRKPC 742

  Fly   577 --------ADESGSALHIMKECVLYMPVVLAMEKNSALKPRVDASIQHLAEGGLI----AKWLKD 629
                    .|..|..              :|..|.|||:..|:.::..|:|.|::    .||..|
Zfish   743 DTMKVGGNLDSKGYG--------------VATPKGSALRTPVNLAVLKLSEQGILDKLKNKWWYD 793

  Fly   630  629
            Zfish   794  793

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68aNP_648455.2 Lig_chan 429..661 CDD:278489 48/229 (21%)
gria3aXP_005165152.1 PBP1_iGluR_AMPA_GluR3 28..399 CDD:107382 56/264 (21%)
ANF_receptor 39..382 CDD:279440 53/247 (21%)
PBP2_iGluR_AMPA 415..797 CDD:270433 84/434 (19%)
Lig_chan 547..810 CDD:278489 56/295 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591184
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

Return to query results.
Submit another query.