DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir68a and gria2a

DIOPT Version :9

Sequence 1:NP_648455.2 Gene:Ir68a / 39269 FlyBaseID:FBgn0036150 Length:704 Species:Drosophila melanogaster
Sequence 2:XP_005170953.1 Gene:gria2a / 170450 ZFINID:ZDB-GENE-020125-3 Length:893 Species:Danio rerio


Alignment Length:563 Identity:108/563 - (19%)
Similarity:202/563 - (35%) Gaps:127/563 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 LWSVFIDAIFLKRQLDN-----KYTISTIAFPGILSGVLVMKN-----IANW-ELGK-GLNGRIL 211
            |..|.:|.:....|.|.     .||::          |:.:||     |..| |:.| .:....|
Zfish   342 LKQVRVDGLTGNIQFDQYGRRVNYTVN----------VMELKNSGPVKIGYWNEMDKMAVTKSDL 396

  Fly   212 FADKTSNLFGTSLPVAISEHVPMV-LWANA-----TKSFQGVEVEIMNALGKALNFKPVYYKPNQ 270
            |.:.|..:...::.|......|.| |..||     .:.::|..|::...:.|...||        
Zfish   397 FPNDTMGMENKTVIVTTILEAPYVMLKKNAELFTDNERYEGYCVDLAAEIAKHCGFK-------- 453

  Fly   271 TENMDWTELDGGASVAYGSGNPDGYAQNGTHIDSMLVDEVAAHSARFAIGDLHLFQVYLKLVELS 335
                  .:|...|...||:.:.:....||      :|.|:....|..|:..|.:..|..::::.|
Zfish   454 ------YQLRIVADGKYGARDAETKIWNG------MVGELVYGKADIAVAPLTITLVREEVIDFS 506

  Fly   336 APHNFECLTFL--TPESSTDNSWQTFILPFSAGMWVGVLLSLFVVGTVFYAISFLNAIINGNVSS 398
            .|.....::.:  .|:.|....: :|:.|.:..:|:.::.:...|..|.:.:|            
Zfish   507 KPFMSLGISIMIKKPQKSKPGVF-SFLDPLAYEIWMCIVFAYIGVSVVLFLVS------------ 558

  Fly   399 EFFRCLRPNRNVPMDPKIYRRISFRIAISRYRSSKGDRMPRDLFD--GYTNCILLTYSMLLYVAL 461
                        ...|..:....|         ..|...|.:..:  |..|.:..:....:....
Zfish   559 ------------RFSPYEWHTEEF---------EDGQLGPSESTNEFGIFNSLWFSLGAFMQQGC 602

  Fly   462 PRMPRNWPLRVLTGWYWIYCILLVATYRASFTAILANPAARVTIDTLEDLLR-SHIPPST-GATE 524
            ...||:...|::.|.:|.:.::::::|.|:..|.|........|::.|||.: :.|...| .|..
Zfish   603 DISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDAGS 667

  Fly   525 NRQFFLEANDEVARKVGEKME-----VF---GYSDDLTSRIAKGQCAYYDNEFYLRYLRV----- 576
            .::||..:...:..|:.:.|:     ||   .....|..|.:||:.||........|:..     
Zfish   668 TKEFFRRSKIALFDKMWQYMKSAEPSVFVKNTVEGVLRVRKSKGKYAYLLESTMNEYIEQRKPCD 732

  Fly   577 -------ADESGSALHIMKECVLYMPVVLAMEKNSALKPRVDASIQHLAEGGLI----AKWLKDA 630
                   .|..|..              :|..|.|||:..|:.::..|.|.||:    .||..|.
Zfish   733 TMKVGGNLDSKGYG--------------IATPKGSALRNAVNLAVLKLNEQGLLDKLKNKWWYDK 783

  Fly   631 IEHLPAEALAQQE-ALMNIQKFWSSFVALLIGYVISMLTLLAE 672
            .|.......:::: :.:::......|..|:.|..::||..|.|
Zfish   784 GECGSGGGESKEKTSALSLSNVAGVFYILVGGLGLAMLVALVE 826

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68aNP_648455.2 Lig_chan 429..661 CDD:278489 51/260 (20%)
gria2aXP_005170953.1 Periplasmic_Binding_Protein_Type_1 23..391 CDD:299141 14/58 (24%)
ANF_receptor 51..373 CDD:279440 8/40 (20%)
PBP2_iGluR_AMPA 406..783 CDD:270433 82/444 (18%)
Lig_chan 538..816 CDD:278489 57/324 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591178
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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