DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir68a and Grin2b

DIOPT Version :9

Sequence 1:NP_648455.2 Gene:Ir68a / 39269 FlyBaseID:FBgn0036150 Length:704 Species:Drosophila melanogaster
Sequence 2:NP_001350679.1 Gene:Grin2b / 14812 MGIID:95821 Length:1482 Species:Mus musculus


Alignment Length:761 Identity:149/761 - (19%)
Similarity:257/761 - (33%) Gaps:222/761 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LIVAFISLAMATSIPIPIANPAPLSGYEMQLKILLQKILWVANVKRCFAVITDDL--HYPI---- 65
            :|:.:.:...||.| ..:||...|:||         ...|:  |....|..||.:  .:|.    
Mouse   227 IILLYCTKEEATYI-FEVANSVGLTGY---------GYTWI--VPSLVAGDTDTVPSEFPTGLIS 279

  Fly    66 --YDRIFFESVGRRVIPFFVMRTNESDDLQRPSRQVELFVKAIKSSDCELNVITILNGWQVQRFL 128
              ||...:....|......::.|..||.|...|     |:...||| |                 
Mouse   280 VSYDEWDYGLPARVRDGIAIITTAASDMLSEHS-----FIPEPKSS-C----------------- 321

  Fly   129 GYIYDNRSLNMQKKFVLLHDLRLFESDMIHLWSVFIDAIFLKRQL---DNKYTISTIAFPGILSG 190
               |:.            |:.|:::|:|::.:  .|:..|..|.|   ::.|.:    .|.::  
Mouse   322 ---YNT------------HEKRIYQSNMLNRY--LINVTFEGRNLSFSEDGYQM----HPKLV-- 363

  Fly   191 VLVMKNIANWE-LGKGLNGRILFADK---------------TSNLFGTSLPVAISEHVPMV---- 235
            ::::.....|| :||       :.||               |.......|.:...|..|.|    
Mouse   364 IILLNKERKWERVGK-------WKDKSLQMKYYVWPRMCPETEEQEDDHLSIVTLEEAPFVIVES 421

  Fly   236 -------------------LWANAT--------KSFQGVEVEIMNALGKALNFKPVYY-----KP 268
                               :..|.|        |..:|..::|:..:.|::.|....|     |.
Mouse   422 VDPLSGTCMRNTVPCQKRIISENKTDEEPGYIKKCCKGFCIDILKKISKSVKFTYDLYLVTNGKH 486

  Fly   269 NQTENMDWTELDGGASVAYGSGNPDGYAQNGTHIDSMLVDEVAAHSARFAIGDLHLFQVYLKLVE 333
            .:..|..|                     ||      ::.||....|..|:|.|.:.:...::|:
Mouse   487 GKKINGTW---------------------NG------MIGEVVMKRAYMAVGSLTINEERSEVVD 524

  Fly   334 LSAPHNFECLTFLTPESSTDNSWQTFILPFSAGMWVGVLLSLFVVGTV-FYAISFLNAIINGNVS 397
            .|.|.....::.:...|:...|...|:.||||.:||.:.:.|.:|..| .:...:.:.:      
Mouse   525 FSVPFIETGISVMVSRSNGTVSPSAFLEPFSADVWVMMFVMLLIVSAVAVFVFEYFSPV------ 583

  Fly   398 SEFFRCLRPNRNVPMDPKIYRRISFRIAISRYRSSKGDRMPRDLFDGYTNCILLTYSMLLYVALP 462
             .:.|||...|. |..|      ||.|.                     ..|.|.:.::...::|
Mouse   584 -GYNRCLADGRE-PGGP------SFTIG---------------------KAIWLLWGLVFNNSVP 619

  Fly   463 -RMPRNWPLRVLTGWYWIYCILLVATYRASFTAILANPAARVTIDTLEDLL----RSHIPP---- 518
             :.|:....:::...:..:.::.:|:|.|:..|.:........:..|.|..    ....||    
Mouse   620 VQNPKGTTSKIMVSVWAFFAVIFLASYTANLAAFMIQEEYVDQVSGLSDKKFQRPNDFSPPFRFG 684

  Fly   519 --STGATEN--RQFFLEANDEVARKVGEKMEVFGYSDDLTS-RIAKGQCAYYDNEFYLRYLRVAD 578
              ..|:||.  |..:.|.:..:.     |....|..|.|.| :..|.....|| ...|.|:...|
Mouse   685 TVPNGSTERNIRNNYAEMHAYMG-----KFNQRGVDDALLSLKTGKLDAFIYD-AAVLNYMAGRD 743

  Fly   579 ESGSALHIMKECVLYMP-VVLAMEKNSALKPRVDASIQHLAEGG----LIAKWLKDAIEHLPAEA 638
            |....:.|....|.... ..:|::|:|..|.:||.:|..|...|    |.|.||.....:...|.
Mouse   744 EGCKLVTIGSGKVFASTGYGIAIQKDSGWKRQVDLAILQLFGDGEMEELEALWLTGICHNEKNEV 808

  Fly   639 LAQQEALMNIQKFWSSFVALLIGYVISMLTLLAER---WHFKHIVM 681
            ::.|   ::|......|..|.....:|::|.:.|.   |.|:|..|
Mouse   809 MSSQ---LDIDNMAGVFYMLGAAMALSLITFICEHLFYWQFRHCFM 851

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68aNP_648455.2 Lig_chan 429..661 CDD:278489 49/250 (20%)
Grin2bNP_001350679.1 PBP1_iGluR_NMDA_NR2 33..388 CDD:380601 45/225 (20%)
PBP2_iGluR_NMDA_Nr2 403..803 CDD:270436 91/467 (19%)
NMDAR2_C 840..1482 CDD:402274 4/12 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846315
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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