DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir68a and Grik3

DIOPT Version :9

Sequence 1:NP_648455.2 Gene:Ir68a / 39269 FlyBaseID:FBgn0036150 Length:704 Species:Drosophila melanogaster
Sequence 2:NP_001074566.1 Gene:Grik3 / 14807 MGIID:95816 Length:919 Species:Mus musculus


Alignment Length:536 Identity:112/536 - (20%)
Similarity:193/536 - (36%) Gaps:152/536 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 MKNIANWELGKGLN------GRILFADKTSNLFGTSLPVAISEHVPMVLWANATKS------FQG 246
            ::.:..|....|||      ||  ..:.|.:|...||.|......|.|::..:.::      |:|
Mouse   402 LEKVGVWSPADGLNITEVAKGR--GPNVTDSLTNRSLIVTTVLEEPFVMFRKSDRTLYGNDRFEG 464

  Fly   247 VEVEIMNALGKALNFKPVYYKPNQTENMDWTELDGGASVAYGSGNPDGYAQNGTHIDSMLVDEVA 311
            ..::::..|...|.|.   |:....|       ||    .||:.:..| ..||      :|.|:.
Mouse   465 YCIDLLKELAHILGFS---YEIRLVE-------DG----KYGAQDDKG-QWNG------MVKELI 508

  Fly   312 AHSARFAIGDLHLFQVYLKLVELSAPHNFECLTFLT--------PESSTDNSWQTFILPFSAGMW 368
            .|.|..|:..|.:..|..|.::.|.|       |:|        ..:.|:.|..:|:.|.|..:|
Mouse   509 DHKADLAVAPLTITHVREKAIDFSKP-------FMTLGVSILYRKPNGTNPSVFSFLNPLSPDIW 566

  Fly   369 VGVLLSLFVVGTVFYAISFLNAIINGNVSSEFFRCLRPNRNVPMDPKIYRRISFRIAISRYRSSK 433
            :.|||:...|..|.:.|:                                |.|            
Mouse   567 MYVLLAYLGVSCVLFVIA--------------------------------RFS------------ 587

  Fly   434 GDRMPRDLFDGY----------TNCILLT---YSM--LLYVALPRMPRNWPLRVLTGWYWIYCIL 483
                |.:.:|.:          .|..||.   :.|  |:......||:....|::.|.:|.:.::
Mouse   588 ----PYEWYDAHPCNPGSEVVENNFTLLNSFWFGMGSLMQQGSELMPKALSTRIIGGIWWFFTLI 648

  Fly   484 LVATYRASFTAILANPAARVTIDTLEDLLR----SHIPPSTGATENRQFFLEANDEVARKVGEKM 544
            ::::|.|:..|.|........||:.:||.:    .:.....|||  ..||.::      |:....
Mouse   649 IISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVKDGAT--MTFFKKS------KISTFE 705

  Fly   545 EVFGYSDDLTSRIAKGQCAYYDNEFYLRYLRVAD-----ESGSALHI-MKECVLYMPVVLAMEK- 602
            :::.:.....|.:.|      :||..::....||     ||.:..:| .:.|.|.....|...| 
Mouse   706 KMWAFMSSKPSALVK------NNEEGIQRTLTADYALLMESTTIEYITQRNCNLTQIGGLIDSKG 764

  Fly   603 -------NSALKPRVDASIQHLAEGGLI----AKWLKDAIEHLPAEALAQQEALMNIQKFWSSFV 656
                   .|..:.::..:|..|.|...:    .||.:.:  ..|.|...:..|| .|||....|:
Mouse   765 YGIGTPMGSPYRDKITIAILQLQEEDKLHIMKEKWWRGS--GCPEEENKEASAL-GIQKIGGIFI 826

  Fly   657 ALLIGYVISMLTLLAE 672
            .|..|.|:|:|..:.|
Mouse   827 VLAAGLVLSVLVAVGE 842

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68aNP_648455.2 Lig_chan 429..661 CDD:278489 54/268 (20%)
Grik3NP_001074566.1 PBP1_iGluR_Kainate_GluR5_7 34..417 CDD:107388 4/14 (29%)
PBP2_iGluR_Kainate_GluR7 433..801 CDD:270441 90/457 (20%)
Glutamate binding. /evidence=ECO:0000250 690..692 1/1 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846323
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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