DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir68a and Grik1

DIOPT Version :9

Sequence 1:NP_648455.2 Gene:Ir68a / 39269 FlyBaseID:FBgn0036150 Length:704 Species:Drosophila melanogaster
Sequence 2:XP_006522977.1 Gene:Grik1 / 14805 MGIID:95814 Length:949 Species:Mus musculus


Alignment Length:616 Identity:125/616 - (20%)
Similarity:210/616 - (34%) Gaps:163/616 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 GYIYDNRSLNMQKKFVLLHDLRLFESDMIHLWSVFIDAIFLKRQLDNKYTISTIAFPGILSGVL- 192
            |.|..|::..::|.|.|                   |.|.||.:...|.:       |.:|..| 
Mouse   374 GRITFNKTDGLRKDFDL-------------------DIISLKEEGTEKAS-------GEVSKHLY 412

  Fly   193 -VMKNIANWELGKGLNGRILFADKTSN----LFGTSLPVAISEHVPMVLWANATK------SFQG 246
             |.|.|..|....|||......|:::|    |...:|.|......|.|::..:.|      .|:|
Mouse   413 KVWKKIGIWNSNSGLNMTDGNRDRSNNITDSLANRTLIVTTILEEPYVMYRKSDKPLYGNDRFEG 477

  Fly   247 VEVEIMNALGKALNF-KPVYYKPNQTENMDWTELDGGASVAYGSGNPDGYAQNGTHIDSMLVDEV 310
            ..::::..|...|.| ..|...|           ||    .||:.|..| ..||      :|.|:
Mouse   478 YCLDLLKELSNILGFLYDVKLVP-----------DG----KYGAQNDKG-EWNG------MVKEL 520

  Fly   311 AAHSARFAIGDLHLFQVYLKLVELSAPHNFECLTFLT--------PESSTDNSWQTFILPFSAGM 367
            ..|.|..|:..|.:..|..|:::.|.|       |:|        ..:.|:....:|:.|.|..:
Mouse   521 IDHRADLAVAPLTITYVREKVIDFSKP-------FMTLGISILYRKPNGTNPGVFSFLNPLSPDI 578

  Fly   368 WVGVLLSLFVVGTVFYAISFLNAIINGNVSSEFFRCLRPNRNVPMDPKIYRRISFRIAISRYRSS 432
            |:.|||:...|..|.:.|:....          :....|:   |.:|                  
Mouse   579 WMYVLLACLGVSCVLFVIARFTP----------YEWYNPH---PCNP------------------ 612

  Fly   433 KGDRMPRDLFD-GYT--NCILLTYSMLLYVALPRMPRNWPLRVLTGWYWIYCILLVATYRASFTA 494
                 ..|:.: .:|  |........|:......||:....|::.|.:|.:.::::::|.|:..|
Mouse   613 -----DSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAA 672

  Fly   495 ILANPAARVTIDTLEDLLRSHIPPSTGATEN---RQFFLEANDEVARKVG--EKMEVFGYSDDLT 554
            .|........||:.:||.: ......||..:   ..||.::      |:.  |||..| .|....
Mouse   673 FLTVERMESPIDSADDLAK-QTKIEYGAVRDGSTMTFFKKS------KISTYEKMWAF-MSSRQQ 729

  Fly   555 SRIAKGQCAYYDNEFYLRYLRVADESGSALHIMKECVLYMPVVLAMEK--------NSALKPRVD 611
            |.:.|.............|..:.:.:.......:.|.|.....|...|        .|..:.::.
Mouse   730 SALVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKIT 794

  Fly   612 ASIQHLAEGGLI----AKWLKDAIEHLPAEALAQQEALMNIQKFWSSFVALLIGYVISMLTLLAE 672
            .:|..|.|.|.:    .||.:.  ...|.|...:..|| .::.....|:.|..|.|:|:...:.|
Mouse   795 IAILQLQEEGKLHMMKEKWWRG--NGCPEEDSKEASAL-GVENIGGIFIVLAAGLVLSVFVAIGE 856

  Fly   673 --------------------RWHFKHIVMKH 683
                                |::|::.|..|
Mouse   857 FIYKSRKNNDIEQKGKSSRLRFYFRNKVRFH 887

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68aNP_648455.2 Lig_chan 429..661 CDD:278489 47/251 (19%)
Grik1XP_006522977.1 PBP1_iGluR_Kainate 38..431 CDD:380605 21/82 (26%)
Periplasmic_Binding_Protein_Type_2 446..815 CDD:389745 87/441 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846320
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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