DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir68a and Gria4

DIOPT Version :9

Sequence 1:NP_648455.2 Gene:Ir68a / 39269 FlyBaseID:FBgn0036150 Length:704 Species:Drosophila melanogaster
Sequence 2:XP_006509904.1 Gene:Gria4 / 14802 MGIID:95811 Length:912 Species:Mus musculus


Alignment Length:822 Identity:155/822 - (18%)
Similarity:283/822 - (34%) Gaps:258/822 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 AMATSIPIPIANPA-PLSG---YEMQLK--------ILLQKILWVANVKRCFAVITD-DLHYPIY 66
            :..:::.|.:..|: |..|   :.:||:        .||....|     .||..:.| |..|.|.
Mouse   108 SFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLSLLDHYEW-----NCFVFLYDTDRGYSIL 167

  Fly    67 DRIFFESVGR---RVIPFFVMRTNE------SDDLQRPSRQVELFVKAIKSSDCEL----NVI-- 116
            ..| .|..|:   .|....|...|:      .::|.|  ||.:.||     .|||:    |::  
Mouse   168 QAI-MEKAGQNGWHVSAICVENFNDVSYRQLLEELDR--RQEKKFV-----IDCEIERLQNILEQ 224

  Fly   117 TILNGWQVQRFLGYIYDNRSLNMQ----KKFVLLH--------DLRLFESDMI----HLWSVFID 165
            .:..|..|:   ||.|...:|..:    ::|:  |        .|..|.:.|:    ..|.....
Mouse   225 IVSVGKHVK---GYHYIIANLGFKDISLERFI--HGGANVTGFQLVDFNTPMVTKLMDRWKKLDQ 284

  Fly   166 AIFLKRQLDNKYTISTIAFPGIL---------------------SGVLVMKNIANWELG------ 203
            ..:...:...||| |.:.:.|:|                     :|..:....|.|..|      
Mouse   285 REYPGSETPPKYT-SALTYDGVLVMAETFRSLRRQKIDISRRGNAGDCLANPAAPWGQGIDMERT 348

  Fly   204 ------KGLNGRILF-----------------------------ADK-------------TSNLF 220
                  :||.|.:.|                             .||             |:.:.
Mouse   349 LKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKLVLIQDAPTLGNDTAAIE 413

  Fly   221 GTSLPVAISEHVPMVLWANATKSFQGVE------VEIMNALGKALNFKPVYYK----PNQTENMD 275
            ..::.|......|.|::....:.|:|.:      |::.:.:.|.:..|   ||    |       
Mouse   414 NRTVVVTTIMESPYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIK---YKIAIVP------- 468

  Fly   276 WTELDGGASVAYGSGNPDGYAQNGTHIDSMLVDEVAAHSARFAIGDLHLFQVYLKLVELSAPHNF 340
                ||    .||:.:.|....||      :|.|:....|..||..|.:..|..::::.|.|...
Mouse   469 ----DG----KYGARDADTKIWNG------MVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMS 519

  Fly   341 ECLTFL--TPESSTDNSWQTFILPFSAGMWVGVLLSLFVVGTVFYAISFLNAIINGNVSSEFFRC 403
            ..::.:  .|:.|....: :|:.|.:..:|:.::.:...|..|.:.:|             .|..
Mouse   520 LGISIMIKKPQKSKPGVF-SFLDPLAYEIWMCIVFAYIGVSVVLFLVS-------------RFSP 570

  Fly   404 LRPNRNVPMDPKIYRRISFRIAISRYRSSKGDRMPRDLFDGYTNCILLTYSMLLYVALPRMPRNW 468
            ...:...|.|.|               ....|:.|.:.  |..|.:..:....:.......||:.
Mouse   571 YEWHTEEPEDGK---------------EGPSDQPPNEF--GIFNSLWFSLGAFMQQGCDISPRSL 618

  Fly   469 PLRVLTGWYWIYCILLVATYRASFTAILANPAARVTIDTLEDLLR-SHIPPST---GATENRQFF 529
            ..|::.|.:|.:.::::::|.|:..|.|........|::.|||.: :.|...|   |:|  ::||
Mouse   619 SGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGST--KEFF 681

  Fly   530 LEANDEVARKVGEKMEVFGYSDD------------LTSRIAKGQCAYYDNEFYLRYLRV------ 576
              ...::|  |.|||..:..|.:            ...|.:||:.|:........|:..      
Mouse   682 --RRSKIA--VYEKMWTYMRSAEPSVFTRTTAEGVARVRKSKGKFAFLLESTMNEYIEQRKPCDT 742

  Fly   577 ------ADESGSALHIMKECVLYMPVVLAMEKNSALKPRVDASIQHLAEGGLI----AKWLKDAI 631
                  .|..|..              :|..|.|:|:..|:.::..|:|.|::    .||..|..
Mouse   743 MKVGGNLDSKGYG--------------VATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWWYDKG 793

  Fly   632 EHLPAEALAQQE-ALMNIQKFWSSFVALLIGYVISMLTLLAE 672
            |..|.::.::.: :.:::......|..|:.|..::||..|.|
Mouse   794 ECGPKDSGSKDKTSALSLSNVAGVFYILVGGLGLAMLVALIE 835

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68aNP_648455.2 Lig_chan 429..661 CDD:278489 51/264 (19%)
Gria4XP_006509904.1 PBP1_iGluR_AMPA_GluR4 28..400 CDD:380611 59/310 (19%)
PBP2_iGluR_AMPA_GluR4 414..795 CDD:270445 86/455 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846322
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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