DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir68a and Gria2

DIOPT Version :9

Sequence 1:NP_648455.2 Gene:Ir68a / 39269 FlyBaseID:FBgn0036150 Length:704 Species:Drosophila melanogaster
Sequence 2:NP_001344853.2 Gene:Gria2 / 14800 MGIID:95809 Length:901 Species:Mus musculus


Alignment Length:719 Identity:134/719 - (18%)
Similarity:245/719 - (34%) Gaps:219/719 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 DLQ-RPSRQVELFVKAIKSSDCELNVITILNGWQVQRFLGYIY--------DNRSLNMQKKFVLL 146
            ||: :..|:|.|..:..|.:|....||||  |..|:   ||.|        |...|.:|.....:
Mouse   198 DLELKKERRVILDCERDKVNDIVDQVITI--GKHVK---GYHYIIANLGFTDGDLLKIQFGGANV 257

  Fly   147 HDLRLFESD------MIHLWSVFIDAIFLKRQLDNKYTISTIAFPGILS--GVLVMKN------- 196
            ...::.:.|      .|..||...:     ::....:| :||.:...|:  .|.||..       
Mouse   258 SGFQIVDYDDSLVSKFIERWSTLEE-----KEYPGAHT-ATIKYTSALTYDAVQVMTEAFRNLRK 316

  Fly   197 --------------IAN----WELG------------KGLNGRILF------------------- 212
                          :||    |..|            :||:|.|.|                   
Mouse   317 QRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTN 381

  Fly   213 ----------ADK-------------TSNLFGTSLPVAISEHVPMVL------WANATKSFQGVE 248
                      .||             ||.|...::.|......|.|:      .....:.::|..
Mouse   382 GPRKIGYWSEVDKMVVTLTELPSGNDTSGLENKTVVVTTILESPYVMMKKNHEMLEGNERYEGYC 446

  Fly   249 VEIMNALGKALNFKPVYYKPNQTENMDWTELDGGASVAYGSGNPDGYAQNGTHIDSMLVDEVAAH 313
            |::...:.|...||   ||        .|.:..|   .||:.:.|....||      :|.|:...
Mouse   447 VDLAAEIAKHCGFK---YK--------LTIVGDG---KYGARDADTKIWNG------MVGELVYG 491

  Fly   314 SARFAIGDLHLFQVYLKLVELSAPHNFECLTFL--TPESSTDNSWQTFILPFSAGMWVGVLLSLF 376
            .|..||..|.:..|..::::.|.|.....::.:  .|:.|....: :|:.|.:..:|:.::.:..
Mouse   492 KADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVF-SFLDPLAYEIWMCIVFAYI 555

  Fly   377 VVGTVFYAISFLNAIINGNVSSEFFRCLRPNRNVPMDPKIYRRISFRIAISRYRSSKGDRMPRDL 441
            .|..|.:.:|                        ...|..:....|...    |.::......:.
Mouse   556 GVSVVLFLVS------------------------RFSPYEWHTEEFEDG----RETQSSESTNEF 592

  Fly   442 FDGYTNCILLTYSMLLYVALPRMPRNWPLRVLTGWYWIYCILLVATYRASFTAILANPAARVTID 506
              |..|.:..:....:.......||:...|::.|.:|.:.::::::|.|:..|.|........|:
Mouse   593 --GIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIE 655

  Fly   507 TLEDLLR-SHIPPST---GATENRQFFLEANDEVARKVGEKMEVFGYSDD------------LTS 555
            :.|||.: :.|...|   |:|  ::||  ...::|  |.:||..:..|.:            ...
Mouse   656 SAEDLSKQTEIAYGTLDSGST--KEFF--RRSKIA--VFDKMWTYMRSAEPSVFVRTTAEGVARV 714

  Fly   556 RIAKGQCAYYDNEFYLRYLRV------------ADESGSALHIMKECVLYMPVVLAMEKNSALKP 608
            |.:||:.||........|:..            .|..|..              :|..|.|:|:.
Mouse   715 RKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYG--------------IATPKGSSLRT 765

  Fly   609 RVDASIQHLAEGGLI----AKWLKDAIEHLPAEALAQQE-ALMNIQKFWSSFVALLIGYVISMLT 668
            .|:.::..|:|.|::    .||..|..|....::.:::: :.:::......|..|:.|..::||.
Mouse   766 PVNLAVLKLSEQGVLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLV 830

  Fly   669 LLAE 672
            .|.|
Mouse   831 ALIE 834

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68aNP_648455.2 Lig_chan 429..661 CDD:278489 49/264 (19%)
Gria2NP_001344853.2 PBP1_iGluR_AMPA_GluR2 28..398 CDD:380612 41/210 (20%)
PBP2_iGluR_AMPA 413..794 CDD:270433 82/451 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846327
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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