DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir68a and grin2b

DIOPT Version :10

Sequence 1:NP_648455.2 Gene:Ir68a / 39269 FlyBaseID:FBgn0036150 Length:704 Species:Drosophila melanogaster
Sequence 2:XP_017948700.2 Gene:grin2b / 100490580 XenbaseID:XB-GENE-949327 Length:1449 Species:Xenopus tropicalis


Alignment Length:469 Identity:94/469 - (20%)
Similarity:169/469 - (36%) Gaps:107/469 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   245 QGVEVEIMNALGKALNFKPVYY-----KPNQTENMDWTELDGGASVAYGSGNPDGYAQNGTHIDS 304
            :|..::|:..:.|.:.|....|     |..:..|..|                     ||     
 Frog   455 KGFCIDILKKIAKTVKFTYDLYLVTNGKHGKKINGTW---------------------NG----- 493

  Fly   305 MLVDEVAAHSARFAIGDLHLFQVYLKLVELSAPHNFECLTFLTPESSTDNSWQTFILPFSAGMWV 369
             ::.||....|..|:|.|.:.:...::|:.|.|.....::.:...|:...|...|:.||||.:||
 Frog   494 -MIGEVVTKRAYMAVGSLTINEERSEVVDFSVPFIETGISVMVSRSNGTVSPSAFLEPFSADVWV 557

  Fly   370 GVLLSLFVVGTV-FYAISFLNAIINGNVSSEFFRCLRPNRNVPMDPKIYRRISFRIAISRYRSSK 433
            .:.:.|.:|..| .:...:.:.:       .:.|||...|. |..|      ||.|.        
 Frog   558 MMFVMLLIVSAVAVFVFEYFSPV-------GYNRCLADGRE-PGGP------SFTIG-------- 600

  Fly   434 GDRMPRDLFDGYTNCILLTYSMLLYVALP-RMPRNWPLRVLTGWYWIYCILLVATYRASFTAILA 497
                         ..|.|.:.::...::| :.|:....:::...:..:.::.:|:|.|:..|.:.
 Frog   601 -------------KAIWLLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYTANLAAFMI 652

  Fly   498 NPAARVTIDTLED-----------LLRSHIPPSTGATEN--RQFFLEANDEVA----RKVGEKME 545
            .......:..|.|           ..|....|: |:||.  |..:||.:..:.    |.|.:.: 
 Frog   653 QEEYVDQVSGLSDKKFQRPNDFSPAFRFGTVPN-GSTERNIRNNYLEMHSYMVKFNQRSVQDAL- 715

  Fly   546 VFGYSDDLTSRIAKGQCAYYDNEFYLRYLRVADESGSALHIMKECVLYMP-VVLAMEKNSALKPR 609
                   |:.:..|.....|| ...|.|:...||....:.|....|.... ..:|::|:|..|.:
 Frog   716 -------LSLKTGKLDAFIYD-AAVLNYMAGRDEGCKLVTIGSGKVFATTGYGIAIQKDSGWKRQ 772

  Fly   610 VDASIQHLAEGG----LIAKWLKDAIEHLPAEALAQQEALMNIQKFWSSFVALLIGYVISMLTLL 670
            ||.:|..|...|    |.|.||.....:...|.::.|   ::|......|..|.....:|::|.:
 Frog   773 VDLAILQLFGDGEMEELEALWLTGICHNEKNEVMSSQ---LDIDNMAGVFYMLAAAMALSLITFI 834

  Fly   671 AER---WHFKHIVM 681
            .|.   |..:|..|
 Frog   835 MEHLFFWQLRHCFM 848

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68aNP_648455.2 Lig_chan 367..661 CDD:459656 62/317 (20%)
grin2bXP_017948700.2 PBP1_iGluR_NMDA_NR2 28..383 CDD:380601
PBP2_iGluR_NMDA_Nr2 400..800 CDD:270436 83/416 (20%)
NMDAR2_C 837..1449 CDD:463148 3/12 (25%)
Blue background indicates that the domain is not in the aligned region.

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