DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir68a and grid2

DIOPT Version :9

Sequence 1:NP_648455.2 Gene:Ir68a / 39269 FlyBaseID:FBgn0036150 Length:704 Species:Drosophila melanogaster
Sequence 2:XP_031759030.1 Gene:grid2 / 100487676 XenbaseID:XB-GENE-955038 Length:1007 Species:Xenopus tropicalis


Alignment Length:517 Identity:99/517 - (19%)
Similarity:191/517 - (36%) Gaps:111/517 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 MKNIANWELGKGLNGRILFADKTSNLFGTSLPVAISEHVPMVLWA----NATKSFQGVEVEIMNA 254
            ::.:..|....||||.:......:|:.|..|.||.....|.|:.:    ...|.:||..:::::|
 Frog   413 IRKLGFWNPVTGLNGSLTDRKLENNMRGVVLRVATVLEEPFVMVSENVLGKPKKYQGFSIDVLDA 477

  Fly   255 LGKALNFKPVYYKPNQTENMDWTELDGGASVAYGSGNPDGYAQNGTHIDSMLVDEVAAHSARFAI 319
            |...|.||...|..:..:              |||...|| :.||      |:.|:....|...|
 Frog   478 LSSYLGFKYEIYVASDHK--------------YGSPQADG-SWNG------LIGELLLKRADMGI 521

  Fly   320 GDLHLFQVYLKLVELSAPHNFECLTFLTPESSTDNSWQTFILPFSAGMWVGVLLSLFVVGTVFYA 384
            ..|.:......:|:.:..:....:..|..::.........:.||...:|..:..::.:||.:.|.
 Frog   522 SALTITPDRENVVDFTTRYMDYSVGVLLRKAEKTVDMFACLAPFDLSLWACIAGTVLLVGLLVYL 586

  Fly   385 ISFLN--AIINGNVSSEFFRCLRPNRNVPMDPKIYRRISFRIAISRYRS--SKGDRMPRDLFDGY 445
            :::||  .:..|:::|               ..:|..:.|     .|.|  .:|..:|      |
 Frog   587 LNWLNPPRLQMGSMTS---------------TTLYNSMWF-----VYGSFVQQGGEVP------Y 625

  Fly   446 TNCILLTYSMLLYVALPRMPRNWPLRVLTGWYWIYCILLVATYRASFTAILANPAARVTIDTLED 510
            |.  |.|                  |::.|.:|::.::::::|.|:..|.|.......:|.:|:|
 Frog   626 TT--LAT------------------RMMMGAWWLFALIVISSYTANLAAFLTISRIESSIQSLQD 670

  Fly   511 LLR-SHIPPST---------------GATENRQFFLEANDEVARKVGEKMEVFGYSDDLTSRIAK 559
            |.| :.||..|               ...|....:.:....:.|..|.:..|....:.: .::..
 Frog   671 LSRQTDIPYGTVFDSAVYEHVRVKGMNPFERDSMYSQMWRMINRSNGSENNVQESLEGI-QKVKH 734

  Fly   560 GQCAYYDNEFYLRYLRVADESGSALHIMKECVLYMPVVLAMEKNSALKPRVDASIQHLAEGG--- 621
            |..|:..:...|.|:.:.|:..| .:.:...:......:|::..|..:......|..|.:.|   
 Frog   735 GNYAFVWDAAVLEYIAINDQDCS-FYTVGNTIADRGYGIALQHGSPYRDIFSQRILELQQNGDMD 798

  Fly   622 -LIAKW--------LKDAIEHLPAEALAQQEALMNIQKFWSSFVALLIGYVISMLTLLAERW 674
             |..||        |..:::      ..|:.:.::|:.|...|..|..|.|:|....:.|.|
 Frog   799 ILKHKWWPRNGQCELHSSMD------TKQKGSSLDIKSFSGVFCILAAGIVLSCFIAMVETW 854

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68aNP_648455.2 Lig_chan 429..661 CDD:278489 47/261 (18%)
grid2XP_031759030.1 Periplasmic_Binding_Protein_type1 28..429 CDD:415822 5/15 (33%)
PBP2_iGluR_delta_2 440..806 CDD:270449 82/434 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.