DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir68a and grin2cb

DIOPT Version :9

Sequence 1:NP_648455.2 Gene:Ir68a / 39269 FlyBaseID:FBgn0036150 Length:704 Species:Drosophila melanogaster
Sequence 2:XP_009305071.2 Gene:grin2cb / 100333648 ZFINID:ZDB-GENE-100308-2 Length:1328 Species:Danio rerio


Alignment Length:707 Identity:125/707 - (17%)
Similarity:234/707 - (33%) Gaps:208/707 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 QRPSRQVELFVKAIKS------------SDCELNVITILNGWQVQRFLGYIYDNRSLNMQKKFVL 145
            ||....|.:.||.:.|            |||...|.:..|....:..|...::::.|:......|
Zfish   296 QRVREGVAIIVKGVHSFHKHRGFIPEGHSDCSSPVKSYANNSLFRHMLNVSWEHKDLSFNSDGYL 360

  Fly   146 LHDLRL---------------FESDMIHL----WSVFIDAIFLKRQLDNKY-TISTIAFPGILSG 190
            .:...:               :|..::.:    |..:  ..||:...||:: |::|:.       
Zfish   361 TNPSMVIIALDRENHWDKVGSYEGGILQMRYPVWPRY--GSFLEPVSDNRHLTVATLE------- 416

  Fly   191 VLVMKNIANWELGKGLNGRILFADKTSNLFGTSLPVAISEHVPMVLWANATKSF----------- 244
                            ....:..:......||    .:...||....:|.|:|.           
Zfish   417 ----------------ERPFVIVESVDPATGT----CVRNTVPCRRQSNRTESIIGHTEPYTKLC 461

  Fly   245 -QGVEVEIMNALGKALNFKPVYYKPNQTENMDWTELDGGASVAYGSGNPDGYAQNGTH------I 302
             :|..::|:..|.:.:.|....|                            ...||.|      :
Zfish   462 CKGFCIDILKKLSRTIKFSYDLY----------------------------LVTNGKHGKMVRGV 498

  Fly   303 DSMLVDEVAAHSARFAIGDLHLFQVYLKLVELSAPHNFECLTFLTPESSTDNSWQTFILPFSAGM 367
            .:.::.||....|..|||.|.:.:...::|:.|.|.....::.:...|:...|...|:.|:|..:
Zfish   499 WNGMIGEVFYKRADMAIGSLTINEERSEIVDFSVPFVETGISVMVARSNGTVSPSAFLEPYSPAV 563

  Fly   368 WVGV-LLSLFVVGTVFYAISFLNAIINGNVSSEFFRCLRPNRNV-----PMDPKIYRRISFRIAI 426
            ||.: ::.|.||....:..             |:|..:..||::     |..|      :|.|..
Zfish   564 WVMMFVMCLTVVAVTVFVF-------------EYFSPVGYNRSLVSAKAPGGP------TFTIGK 609

  Fly   427 SRYRSSKGDRMPRDLFDGYTNCILLTYSMLLYVALP-RMPRNWPLRVLTGWYWIYCILLVATYRA 490
            |                     :.|.:.::...::| ..|:....:::...:..:.::.:|:|.|
Zfish   610 S---------------------VWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFFAVIFLASYTA 653

  Fly   491 SFTAILANPAARVTIDTLEDLL----RSHIPP------STGATEN--RQFFLEANDEVARKVGEK 543
            :..|.:.......|:..|.|..    :.|.||      ..|:||.  |..:.:.:..:. |..:|
Zfish   654 NLAAFMIQEQYIDTVSGLSDKKFQKPQEHYPPFRFGTVPNGSTERNIRSNYPDMHTHMI-KYNQK 717

  Fly   544 MEVFGYSDDLTS-RIAKGQCAYYDNEFYLRYLRVADESGSALHIMKECVLYMP-VVLAMEKNSAL 606
                |..:.|.| :..|.....|| ...|.|:...||....:.|....|.... ..:|::|:|..
Zfish   718 ----GVEEALNSLKTGKLDAFIYD-AAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALQKDSRW 777

  Fly   607 KPRVD-ASIQHLAEGG---LIAKWLKDAIEHLPAEALAQQEALMNIQKFWSSFVALLIGYVISML 667
            |..:| |.:|.|.:|.   |...||....::...|.::.:   ::|......|..||:...:|:|
Zfish   778 KRPIDLALLQFLGDGDTQRLETVWLSGICQNEKNEVMSSK---LDIDNMAGVFYMLLVAMGLSLL 839

  Fly   668 TLLAER---WHFKHIVMKHPMYD------------------------VYNPSLYYNF 697
            ....|.   |..:|.|.|....|                        :.||.:..|:
Zfish   840 VFAWEHLLYWKLRHSVHKSDRLDFLLAISRGIYSCFNGVEDIGRSTGIQNPDITANY 896

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir68aNP_648455.2 Lig_chan 429..661 CDD:278489 48/250 (19%)
grin2cbXP_009305071.2 PBP1_iGluR_NMDA_NR2 37..396 CDD:107373 16/99 (16%)
PBP2_iGluR_NMDA_Nr2 407..808 CDD:270436 90/501 (18%)
NMDAR2_C 845..>932 CDD:313729 8/52 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591175
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.830

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