DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ube3a and herc5.2

DIOPT Version :9

Sequence 1:NP_648452.1 Gene:Ube3a / 39266 FlyBaseID:FBgn0061469 Length:973 Species:Drosophila melanogaster
Sequence 2:XP_005160175.1 Gene:herc5.2 / 794323 ZFINID:ZDB-GENE-090311-16 Length:987 Species:Danio rerio


Alignment Length:1096 Identity:251/1096 - (22%)
Similarity:410/1096 - (37%) Gaps:341/1096 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 EMKRSAVRSLIKRYFHQLQSGCGNANCSNANCASSGKVAPMTPNEVA--------ARALQL---- 86
            ::||..:||::          ||....  ...|..|||..|....|.        .:.:|:    
Zfish    75 DLKREKIRSIV----------CGEDGA--VLLADGGKVLLMDKYTVCRPLKGLDNTKVIQIACGD 127

  Fly    87 -----FSQDAQLCEAFTSEAN---------------SPQDVDMLSPNDSSSSSSGSSTSTITSAS 131
                 .|.|.||   |....|               |||.:..|.....:..|:|.:.|.:.|.|
Zfish   128 QHSVALSNDGQL---FVWGENAHGQLGLRKEQALIQSPQHLQSLCGIPVAQISAGGNHSFVLSLS 189

  Fly   132 TTTTTSRQSQSTPAAVVVPVSSPYLTQSVPQLDIAGAEHSSGD-SEPCTPTLAPVHSLDANSLIA 195
                          .||....|    .|..||.:       || ::...||:  |.||.....::
Zfish   190 --------------GVVFGWGS----NSAGQLGL-------GDTTDRFVPTI--VKSLSGKKTVS 227

  Fly   196 LYEQCRAADSYDRICHAIGVVFSSVDRLGKSFIRSAEPAASSSLQELLANSPGALNKEQLRTLEG 260
            :  .|  ...:.......|.||:               ..|....:|..||.             
Zfish   228 I--SC--GGEHTATLSKGGTVFT---------------FGSGGFGQLGHNSL------------- 260

  Fly   261 EHDKDEDSTQQVDEQSESAANATATAESVESEAEPEEEDDDVCSSQSSDTLVDLPGLRRVQRLL- 324
               |||...:.|.|...|..:..                  .|....:..||.|     ..|:. 
Zfish   261 ---KDEHHPRLVAELWGSKVSQV------------------TCGRHHTLVLVAL-----TNRIYS 299

  Fly   325 FGCQIRAIT---EKLTSSVIQLSDWVIYMRTD------WERVI----HCLVICFDLATN------ 370
            |||.::...   |::..||    ...:.:.||      .|::|    |...:.|....|      
Zfish   300 FGCGMQGQLGNGEQVKQSV----PLPVLLPTDCNCEFTMEKIIAGEKHSFALFFKNPGNESTKPK 360

  Fly   371 --TNNSVVDMDYLDRVLPKLCQAASAMPVPAQARLARIWAAHCSDQLHSLIAACQQQITLQVLLD 433
              .|..::.::  ||::.:....:...|. .:..:.:::::          |.|.....|:..||
Zfish   361 SSMNGGILTLN--DRMIDRWVSGSYPWPT-VKKEIKKVFSS----------AVCLNGSFLKPSLD 412

  Fly   434 EE----------SMRENESIISVTKVLKIVFYANILASELERPSCRVPLEDRTEAATASGSAAVE 488
            |:          .:.:||.:||  :|:|:: ...:|.|...:|                   |.|
Zfish   413 EQDFDLVGKSFSKLTDNEKVIS--EVVKVI-QQTLLPSLNPKP-------------------AHE 455

  Fly   489 DDLFVYNSLLEPHMPKFAEDQFEKELQVSAIDCRKPLIP------------LEEFYNEA----LS 537
            :.|.:|  ||.|.:.|..|.....||       .|.|..            ||.|:::.    |.
Zfish   456 ESLRLY--LLLPELIKGLEQYQRSEL-------NKALASKILQLNSAAREMLEMFWSKLPDDWLK 511

  Fly   538 ENIQMHH-------DYLSYKTLAMESEIG-----------------SGHAN--YFSFMLYAFILT 576
            ..:::.|       ||:|  ..||:|::.                 |.|.:  ...|::|..   
Zfish   512 SLVKLFHKESADLIDYMS--VCAMDSDLKHLQNLLRILQMAYKVCCSTHRDITISDFIIYEI--- 571

  Fly   577 PSTKVDAL----------------YYDSRMRMYSER-------------YSSLHSILNNIGQVGQ 612
             |..::||                .|..::|.|..:             |:|...|.|::     
Zfish   572 -SDLLNALQATIDDLADWDPFVDYVYMMKLRDYFIKTLEILVKFPFVADYASKRGIFNHL----- 630

  Fly   613 EDNPRPDLK-----------------LTVRRDQLINDALIGLEMVAMSNPKDLKKQLVVEFVGEQ 660
                  ::|                 |.:.|:.|:.|.|..|.    .|.........|.|:||.
Zfish   631 ------EIKMIRRSSNRFLGNATFNVLHINRESLLMDTLKYLR----QNTHSFSHLSRVAFIGED 685

  Fly   661 GIDEGGVSKEFFQLIVEEIFNPAFGMFIQQEETNNMWFNATPFENGAQFTLIGIIIGLAIYNNVT 725
            |||..|:|.|||.|| .:.|.......::...::.:|||.........|..:|:|.|:|:||...
Zfish   686 GIDMRGLSAEFFSLI-SKSFLKWDKKILEVHPSSLVWFNPHHTRGNKNFYYLGVICGMALYNRHH 749

  Fly   726 LAVNFPMVVYRKLIGYCGTFADLSDWSPALYKSLKSMLDYQGQDMEEVFEQTFKISYSDVFGDVV 790
            :.::||:.:::||:....:..||.:.||...:|||::|    ::.|||.:..| :.::     |.
Zfish   750 INIDFPLALFKKLLQQKPSLDDLEELSPVEARSLKNLL----KEDEEVVDLLF-LDFT-----VK 804

  Fly   791 QHELVPNGQDVLVGQHNKELFVNLYSDFLLNTNIEQQFNAFRKGFEMVTDESPLK--LLFRPEEI 853
            .|||||||..:.|.:.|::.:|:||.||:.|.:::.||..|.:||   :...||.  .:|.|||:
Zfish   805 GHELVPNGSQIQVNKVNRQKYVDLYVDFVFNKSVKTQFEQFTRGF---SKGCPLDAWTMFHPEEL 866

  Fly   854 EMLVCGSREFDFVELENSTVYEGGYTEKSQYIQDFWSIVHAMPSEDKHKLLEFTTGSARVPVGGL 918
            :.|:.||.::::.|.:.|..|| |.:...:.|::||::...:..|.|.|.|.|..|:.|||.||.
Zfish   867 QELLHGSPQYNWKEFQQSASYE-GCSASDELIKNFWTVFFELSEEHKKKFLMFLYGTERVPAGGF 930

  Fly   919 KCLRLLI-TRHGPD-SDRLPTSHTCFNVLLLPEYSSREKLEERLMKAINYSKGFGM 972
            ...|:.| ||..|| .|.||.:.|||..|:||:|:....|..:|..|||..:.||:
Zfish   931 SKRRIKISTRDCPDPDDHLPKAQTCFGRLVLPKYTDINTLRNKLTHAINVCEVFGL 986

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ube3aNP_648452.1 AZUL 40..94 CDD:293166 14/70 (20%)
HECTc 620..971 CDD:238033 119/371 (32%)
HECTc 647..970 CDD:214523 111/326 (34%)
herc5.2XP_005160175.1 RCC1_2 120..149 CDD:290274 7/31 (23%)
RCC1 136..186 CDD:278826 12/52 (23%)
RCC1 189..238 CDD:278826 15/79 (19%)
RCC1 242..290 CDD:278826 14/96 (15%)
RCC1 296..347 CDD:278826 12/54 (22%)
HECTc 649..985 CDD:294058 118/354 (33%)
HECTc 678..984 CDD:214523 111/320 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D276447at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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