DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ube3a and ube3b

DIOPT Version :10

Sequence 1:NP_648452.1 Gene:Ube3a / 39266 FlyBaseID:FBgn0061469 Length:973 Species:Drosophila melanogaster
Sequence 2:NP_001072875.1 Gene:ube3b / 780337 XenbaseID:XB-GENE-1010563 Length:1072 Species:Xenopus tropicalis


Alignment Length:767 Identity:186/767 - (24%)
Similarity:310/767 - (40%) Gaps:193/767 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   293 AEPEEEDDDVCSSQSSDTLVDLPGLRRVQRLLF--GCQIRAIT-----EKLTSSVIQLSDWVIYM 350
            ||.::....|..|.||....:|| ::.:.:..|  ...:|.|.     :|:.|..:|        
 Frog   407 AENQDVSVPVSQSSSSSPQNNLP-MKNLFKRAFQKSASVRHILKPIGGKKVDSPEVQ-------- 462

  Fly   351 RTDWERVIHCLVICFDLATNTNNSV-----VDMDYLDRVLPKLCQAASAMPVPAQARLARIWAAH 410
                 :|.:..|: :.:|..|...:     ..:.|||.:||||                  ||..
 Frog   463 -----KVCNICVL-YQMALTTLTQIRLQILTGLTYLDDLLPKL------------------WAFI 503

  Fly   411 C----------------SDQ------LHSLIAACQQQITLQVLLDEESMREN------ESIISVT 447
            |                ||.      |..|:..|.....|..:||:..:.|.      |.:::::
 Frog   504 CELGPQGGLKLFLECLSSDTEESRRLLAMLVLFCDCSRHLITILDDIEVYEEQISFKLEELVTIS 568

  Fly   448 KVLKIVFYANILASELERPSCRVPLEDRTEAATASGSAAVEDDLF--VYNSLLEPHMPKFAEDQF 510
            ..|....:..|....||               .|.|...   :||  |:..|:.         .:
 Frog   569 SFLNSFVFKMIWDGLLE---------------NAKGETL---ELFHSVHGWLMV---------LY 606

  Fly   511 EKELQVSAIDCRKPLIPLEEFYNEALSENIQMHHDYLSYKTLAMESEIGSGHANYFSFMLYAFIL 575
            |:       |||:...|.:.:..:.|...       |.::.|..|.:             .|.:|
 Frog   607 ER-------DCRRRFAPEDHWLRKDLKPT-------LLFQELDKERK-------------RAQLL 644

  Fly   576 TPSTKVDALYYDSRMRMYSERYSSLHSIL----NNIGQVGQEDNPRPDL-KLTVRRDQLINDALI 635
                    |.|...:..:..|.....:|:    ..:|.| :.:...|.: .:|:||.:::.|   
 Frog   645 --------LQYIPHVIPHKNRVLLFRNIVTKEKEKLGLV-ETNTASPHVTHITIRRSRMLED--- 697

  Fly   636 GLEMVAMSNPKDLKKQLVVEFVG-----EQGIDEGGVSKEFFQLIVEEIFNPAFGMFIQQEETNN 695
            |.:.:...:...:|..:.|:||.     |.|||:.||.|||.:.|::.:|:||..:|......:.
 Frog   698 GYDQLRQLSQNAMKGVIRVKFVNDLGVDEAGIDQDGVFKEFLEEIIKRVFDPALNLFKTTSSGDR 762

  Fly   696 MWFNATPF--ENGAQ-FTLIGIIIGLAIYNNVTLAVNFPMVVYRKLIG-YCGTFADLSDWSPAL- 755
            ::.:.|.:  ||..| |..:|.::|.|:|..:.:.|.|......:|:| :...|....|..|:| 
 Frog   763 LYPSPTSYIHENYLQLFEFVGKMLGKAVYEGIVVDVPFASFFLSQLLGHHHSIFYSSVDELPSLD 827

  Fly   756 ---YKSLKSMLDYQGQDMEEVFEQTFKISY-SDVFGDVVQHELVPNGQDVLVGQHNKELFVNLYS 816
               ||:|.|:..|.|    ::.:....:|| .||.|.:|.|||||.|:.:.|...||..:::|.:
 Frog   828 SEFYKNLTSIKRYDG----DISDLGLTLSYDEDVMGQLVCHELVPGGKSIPVTNENKISYIHLMA 888

  Fly   817 DFLLNTNIEQQFNAFRKGFEMVTDESPLKLLFRPEEIEMLVCG-SREFDFVELENSTVYEGGYTE 880
            .|.::|.|:.|..||..||..:.....:::...| |::.|:.| :.|.|..:|:..|||.||:..
 Frog   889 HFRMHTQIKNQTVAFISGFRSIIRPEWIRMFSAP-ELQRLISGDNAEIDLDDLKKHTVYYGGFHG 952

  Fly   881 KSQYIQDFWSIV-HAMPSEDKHKLLEFTTGSARVPVGG---------LKC--------------- 920
            ..:.|...|.|: :...||:|...|:|.|..:|.|:.|         ::|               
 Frog   953 SHRVIIWLWDILANDFSSEEKAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGS 1017

  Fly   921 -LRLLIT-RHGPDSDRLPTSHTCFNVLLLPEYSSREKLEERLMKAINYSKGF 970
             ||...| |......|||||.||||:|.||.||.:..|.|:|..||:.:.||
 Frog  1018 VLRGFFTIRKKEPGGRLPTSSTCFNLLKLPNYSKKGILREKLRYAISMNTGF 1069

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ube3aNP_648452.1 AZUL 40..94 CDD:465173
HECTc 620..971 CDD:238033 120/394 (30%)
ube3bNP_001072875.1 IQ 28..50 CDD:197470
HECTc 686..1070 CDD:238033 120/392 (31%)
Blue background indicates that the domain is not in the aligned region.

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