DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ube3a and smurf1

DIOPT Version :9

Sequence 1:NP_648452.1 Gene:Ube3a / 39266 FlyBaseID:FBgn0061469 Length:973 Species:Drosophila melanogaster
Sequence 2:NP_001001943.1 Gene:smurf1 / 321695 ZFINID:ZDB-GENE-040426-2744 Length:731 Species:Danio rerio


Alignment Length:789 Identity:187/789 - (23%)
Similarity:326/789 - (41%) Gaps:209/789 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   285 TAESVESEAEPE-EEDDDVCSSQSSDTLVDLPGLRRVQRL----LFGCQIRAITEKLTSSVIQLS 344
            :.::|:|..:|: .:..|:...::....:.:...:::.:.    ..||     ...|::::.:|.
Zfish    50 STDTVKSTLDPKWNQHYDLYIGKTDSITISVWNHKKIHKKQGAGFLGC-----VRLLSNAISRLK 109

  Fly   345 DWVIYMRTDWERVIHCLVICFDLATNTNNSVVDMDYLDRVLPKLCQAASAMPVPAQARLARIWAA 409
            |      |.::|:..|.:...|........||.:...||:       .|..||            
Zfish   110 D------TGYQRLDLCKLNPSDSDAVRGQIVVSLQTRDRI-------GSGGPV------------ 149

  Fly   410 HCSDQLHSLIAACQQQITLQVLLDEESMRENESIISVTKVLKIVFYANILASELERPSCRVPLED 474
                                  :|...:.|||.     .|.:.......|:..:|.|   :|..|
Zfish   150 ----------------------VDCRGLVENEG-----PVFEDSGPGRPLSCFMEEP---MPYTD 184

  Fly   475 RTEAATASGSAAVEDDLFVYNSLLEPHMPKFAEDQFEKELQVSAI---DCR-------------- 522
            .|.||......|:|          .|:.        |:.||...|   |.|              
Zfish   185 PTGAAGGGNCRALE----------SPNQ--------EQRLQAQRIRNQDSRGHTHTPQNRPHGHQ 231

  Fly   523 KPLIPLEEFYNEALSENIQMH-----------HDYLSYKTLAMES--EIGSGHANYFSFMLYAFI 574
            .|.:|  |.|.:..:...|::           ||....:.|...|  |:|.              
Zfish   232 SPDLP--EGYEQRTTVQGQVYFLHTQTGVSTWHDPRIPRDLNSVSCEELGP-------------- 280

  Fly   575 LTP-----STKVDALYY---DSRMRMYSERYSSLHSILNNIGQVGQEDNPRP------------- 618
            |.|     ||....:|:   ::|...:::  ..||.|::...||.:.....|             
Zfish   281 LPPGREIRSTVSGRIYFVDHNNRTTQFTD--PRLHHIMSQHSQVKESSQALPVQMEVGMEEGDGE 343

  Fly   619 -------DL---------------------KLTVRRDQLINDALIGLEMVAMSNPKDLKKQLVVE 655
                   ||                     ::.|.|:::..::   ...:....||||||:|:|:
Zfish   344 LPVRYERDLVQKLKVLRHELSLQQPQAGHCRIEVSREEIFEES---YRQIMKMRPKDLKKRLMVK 405

  Fly   656 FVGEQGIDEGGVSKEFFQLIVEEIFNPAFGMFIQQEETNNMW-------FNATPFENGAQFTLIG 713
            |.||:|:|.|||::|:..|:..|:.||.:|:|  |..|:|::       .:..| ::.:.|..:|
Zfish   406 FRGEEGLDYGGVAREWLYLLCHEMLNPYYGLF--QYSTDNIYTLQINPDSSINP-DHLSYFHFVG 467

  Fly   714 IIIGLAIYNNVTLAVNFPMVVYRKLIGYCGTFADLSDWSPALYKSLKSMLDYQGQDMEEVFEQTF 778
            .|:|||:::...:...|.:..|::|:|......||....|.|:|||..:|:   .|:..|.:.||
Zfish   468 RIMGLAVFHGHYINGGFTLPFYKQLLGKPIQLCDLETVDPELHKSLVWILE---NDITSVLDHTF 529

  Fly   779 KISYSDVFGDVVQHELVPNGQDVLVGQHNKELFVNLYSDFLLNTNIEQQFNAFRKGFEMVTDESP 843
            .:.: :.||..:||||.|||:::.|.:.||:.:|.||.::.....||.||.|.:|||..:..:..
Zfish   530 CVEH-NAFGKFLQHELKPNGKNIPVTEENKKEYVRLYVNWRFMRGIEAQFLALQKGFNELIPQHL 593

  Fly   844 LKLLFRPEEIEMLVCGSREFDFVELENSTVYEGGYTEKSQYIQDFWSIVHAMPSEDKHKLLEFTT 908
            || .|..:|:|:::.|..:.|..:.:.:|..:....: |..::.||..|.:...|.:.:||:|.|
Zfish   594 LK-PFDNKELELIIGGLGKIDLNDWKANTRLKHCVAD-SNIVKWFWQAVESFDEERRGRLLQFVT 656

  Fly   909 GSARVPVGGLKCLRLLITRHGP----------DSDRLPTSHTCFNVLLLPEYSSREKLEERLMKA 963
            ||.|||:.|.|.|:......||          ::|.||.:|||||.:.:|.|.|.|||.|:|:.|
Zfish   657 GSTRVPLQGFKALQGSTGSAGPRLFTIHLIDANTDNLPKAHTCFNRIDIPPYESYEKLYEKLLTA 721

  Fly   964 INYSKGFGM 972
            :..:.||.:
Zfish   722 VEETCGFAV 730

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ube3aNP_648452.1 AZUL 40..94 CDD:293166
HECTc 620..971 CDD:238033 120/388 (31%)
HECTc 647..970 CDD:214523 114/339 (34%)
smurf1NP_001001943.1 C2_Smurf-like 14..138 CDD:176028 15/98 (15%)
WW 234..266 CDD:197736 6/33 (18%)
WW 280..312 CDD:197736 6/47 (13%)
HECTc 373..728 CDD:238033 118/366 (32%)
HECTc 397..728 CDD:214523 114/339 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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