DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ube3a and smurf1

DIOPT Version :10

Sequence 1:NP_648452.1 Gene:Ube3a / 39266 FlyBaseID:FBgn0061469 Length:973 Species:Drosophila melanogaster
Sequence 2:NP_001001943.1 Gene:smurf1 / 321695 ZFINID:ZDB-GENE-040426-2744 Length:731 Species:Danio rerio


Alignment Length:789 Identity:187/789 - (23%)
Similarity:326/789 - (41%) Gaps:209/789 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   285 TAESVESEAEPE-EEDDDVCSSQSSDTLVDLPGLRRVQRL----LFGCQIRAITEKLTSSVIQLS 344
            :.::|:|..:|: .:..|:...::....:.:...:::.:.    ..||     ...|::::.:|.
Zfish    50 STDTVKSTLDPKWNQHYDLYIGKTDSITISVWNHKKIHKKQGAGFLGC-----VRLLSNAISRLK 109

  Fly   345 DWVIYMRTDWERVIHCLVICFDLATNTNNSVVDMDYLDRVLPKLCQAASAMPVPAQARLARIWAA 409
            |      |.::|:..|.:...|........||.:...||:       .|..||            
Zfish   110 D------TGYQRLDLCKLNPSDSDAVRGQIVVSLQTRDRI-------GSGGPV------------ 149

  Fly   410 HCSDQLHSLIAACQQQITLQVLLDEESMRENESIISVTKVLKIVFYANILASELERPSCRVPLED 474
                                  :|...:.|||.     .|.:.......|:..:|.|   :|..|
Zfish   150 ----------------------VDCRGLVENEG-----PVFEDSGPGRPLSCFMEEP---MPYTD 184

  Fly   475 RTEAATASGSAAVEDDLFVYNSLLEPHMPKFAEDQFEKELQVSAI---DCR-------------- 522
            .|.||......|:|          .|:.        |:.||...|   |.|              
Zfish   185 PTGAAGGGNCRALE----------SPNQ--------EQRLQAQRIRNQDSRGHTHTPQNRPHGHQ 231

  Fly   523 KPLIPLEEFYNEALSENIQMH-----------HDYLSYKTLAMES--EIGSGHANYFSFMLYAFI 574
            .|.:|  |.|.:..:...|::           ||....:.|...|  |:|.              
Zfish   232 SPDLP--EGYEQRTTVQGQVYFLHTQTGVSTWHDPRIPRDLNSVSCEELGP-------------- 280

  Fly   575 LTP-----STKVDALYY---DSRMRMYSERYSSLHSILNNIGQVGQEDNPRP------------- 618
            |.|     ||....:|:   ::|...:::  ..||.|::...||.:.....|             
Zfish   281 LPPGREIRSTVSGRIYFVDHNNRTTQFTD--PRLHHIMSQHSQVKESSQALPVQMEVGMEEGDGE 343

  Fly   619 -------DL---------------------KLTVRRDQLINDALIGLEMVAMSNPKDLKKQLVVE 655
                   ||                     ::.|.|:::..::   ...:....||||||:|:|:
Zfish   344 LPVRYERDLVQKLKVLRHELSLQQPQAGHCRIEVSREEIFEES---YRQIMKMRPKDLKKRLMVK 405

  Fly   656 FVGEQGIDEGGVSKEFFQLIVEEIFNPAFGMFIQQEETNNMW-------FNATPFENGAQFTLIG 713
            |.||:|:|.|||::|:..|:..|:.||.:|:|  |..|:|::       .:..| ::.:.|..:|
Zfish   406 FRGEEGLDYGGVAREWLYLLCHEMLNPYYGLF--QYSTDNIYTLQINPDSSINP-DHLSYFHFVG 467

  Fly   714 IIIGLAIYNNVTLAVNFPMVVYRKLIGYCGTFADLSDWSPALYKSLKSMLDYQGQDMEEVFEQTF 778
            .|:|||:::...:...|.:..|::|:|......||....|.|:|||..:|:   .|:..|.:.||
Zfish   468 RIMGLAVFHGHYINGGFTLPFYKQLLGKPIQLCDLETVDPELHKSLVWILE---NDITSVLDHTF 529

  Fly   779 KISYSDVFGDVVQHELVPNGQDVLVGQHNKELFVNLYSDFLLNTNIEQQFNAFRKGFEMVTDESP 843
            .:.: :.||..:||||.|||:::.|.:.||:.:|.||.::.....||.||.|.:|||..:..:..
Zfish   530 CVEH-NAFGKFLQHELKPNGKNIPVTEENKKEYVRLYVNWRFMRGIEAQFLALQKGFNELIPQHL 593

  Fly   844 LKLLFRPEEIEMLVCGSREFDFVELENSTVYEGGYTEKSQYIQDFWSIVHAMPSEDKHKLLEFTT 908
            || .|..:|:|:::.|..:.|..:.:.:|..:....: |..::.||..|.:...|.:.:||:|.|
Zfish   594 LK-PFDNKELELIIGGLGKIDLNDWKANTRLKHCVAD-SNIVKWFWQAVESFDEERRGRLLQFVT 656

  Fly   909 GSARVPVGGLKCLRLLITRHGP----------DSDRLPTSHTCFNVLLLPEYSSREKLEERLMKA 963
            ||.|||:.|.|.|:......||          ::|.||.:|||||.:.:|.|.|.|||.|:|:.|
Zfish   657 GSTRVPLQGFKALQGSTGSAGPRLFTIHLIDANTDNLPKAHTCFNRIDIPPYESYEKLYEKLLTA 721

  Fly   964 INYSKGFGM 972
            :..:.||.:
Zfish   722 VEETCGFAV 730

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ube3aNP_648452.1 AZUL 40..94 CDD:465173
HECTc 620..971 CDD:238033 120/388 (31%)
smurf1NP_001001943.1 C2_Smurf-like 14..138 CDD:176028 15/98 (15%)
WW 234..266 CDD:197736 6/33 (18%)
WW 280..312 CDD:197736 6/47 (13%)
HECTc 373..728 CDD:238033 118/366 (32%)
Blue background indicates that the domain is not in the aligned region.

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