DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ube3a and Herc4

DIOPT Version :9

Sequence 1:NP_648452.1 Gene:Ube3a / 39266 FlyBaseID:FBgn0061469 Length:973 Species:Drosophila melanogaster
Sequence 2:NP_001012074.1 Gene:Herc4 / 309758 RGDID:1310971 Length:1057 Species:Rattus norvegicus


Alignment Length:662 Identity:204/662 - (30%)
Similarity:316/662 - (47%) Gaps:112/662 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   369 TNTNNSVVDMDYLDRVLPKLCQAASAMPVPAQARLARIWAAHCSDQLHSLIAACQQQITLQVLLD 433
            |.|..|.|||:                    .|||.          .|.||.....||:.||...
  Rat   451 TGTRFSGVDMN--------------------AARLL----------FHRLIQPDHPQISQQVAAS 485

  Fly   434 EESMRENESIISVTKVLKIVFYANILASELERPSCRVPL----EDRTEAATASGSAAVEDD---- 490
            .|.....:...|:..|..:.||       |..|.|  ||    .:.|..|...|:|.|..:    
  Rat   486 LEKNLIPKLTSSLPDVEALRFY-------LTLPEC--PLMSDCNNFTTIAIPFGTALVNLEKAPL 541

  Fly   491 --LFVYNSLLEPHMPKFAE-DQFEKELQVSAIDCRK----------------------------- 523
              |..:.|:|||  |.|.: .:..||:.|..:...|                             
  Rat   542 KVLENWWSVLEP--PLFLKIVELFKEVVVHLLKLYKIGIPPSERRIFNSFLHTALKVLEILHRVN 604

  Fly   524 ----PLIPLEEFYNEALSENIQMHHDYLSY-KTLAMESEIGSGHANY----FSFMLYAFILTPST 579
                .||..::||...:.|.|.:.:||::: :..|...::..|....    .:...|.|:.....
  Rat   605 ERTGQLIQYDKFYIHEVQELIDIRNDYINWVQQQAYGVDVSHGITELADIPVTICTYPFVFDAQA 669

  Fly   580 KVDALYYDSRMRM-------YSERYSSLH-SILNNIGQVGQEDNPRPDLKLTVRRDQLINDALIG 636
            |...|..|:.::|       :.:..|||. .::.::         .|.|.|.|||:.::.||   
  Rat   670 KTTLLQTDAVLQMQMAIDQAHRQNVSSLFLPVIESV---------NPCLILVVRRENIVGDA--- 722

  Fly   637 LEMVAMSNPKDLKKQLVVEFVGEQGIDEGGVSKEFFQLIVEEIFNPAFGMFIQQEETNNMWFNAT 701
            :|::..:...|.||.|.|.||||..:|.|||.||||.||:.|:.:|.:|||...|::..:||:..
  Rat   723 MEVLRKTKNIDYKKPLKVIFVGEDAVDAGGVRKEFFLLIMRELLDPKYGMFRYYEDSRLIWFSDK 787

  Fly   702 PFENGAQFTLIGIIIGLAIYNNVTLAVNFPMVVYRKLIGYCGTFADLSDWSPALYKSLKSMLDYQ 766
            .||:...|.|||:|.||||||...:.::||:.:|:||:....:..||.:..|.:.:|::.:|||.
  Rat   788 TFEDSDLFHLIGVICGLAIYNFTIVDLHFPLALYKKLLKRKPSLDDLKELMPDVGRSMQQLLDYP 852

  Fly   767 GQDMEEVFEQTFKISYSDVFGDVVQHELVPNGQDVLVGQHNKELFVNLYSDFLLNTNIEQQFNAF 831
            ..|:||.|...|.|:..: ||.....|||.||.|..|.:.|::.||:.|.|::.|.::...|:||
  Rat   853 EDDIEETFCLNFTITVEN-FGATEVKELVLNGADTAVNKQNRQEFVDAYVDYIFNKSVASLFDAF 916

  Fly   832 RKGFEMVTDESPLKLLFRPEEIEMLVCGSREFDFVELENSTVYEGGYTEKSQYIQDFWSIVHAMP 896
            ..||..|.....| |||:|.|::.:|.|:..:|:.|||.:|.|:|.|..:...|:.||.:.|.:|
  Rat   917 HAGFHKVCGGKVL-LLFQPNELQAMVIGNTNYDWKELEKNTEYKGEYWAEHPTIKIFWEVFHELP 980

  Fly   897 SEDKHKLLEFTTGSARVPVGGLKCLRLLITRHGPDSDRLPTSHTCFNVLLLPEYSSREKLEERLM 961
            .|.|.:.|.|.|||.|:|:.|:|.|:|:|...|.....||.||||||:|.||:|:.:|.|..:|:
  Rat   981 LEKKKQFLLFLTGSDRIPILGMKSLKLVIQSTGGGESYLPVSHTCFNLLDLPKYTEKETLRCKLI 1045

  Fly   962 KAINYSKGFGML 973
            :||::::||.::
  Rat  1046 QAIDHNEGFSLI 1057

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ube3aNP_648452.1 AZUL 40..94 CDD:293166
HECTc 620..971 CDD:238033 141/350 (40%)
HECTc 647..970 CDD:214523 132/322 (41%)
Herc4NP_001012074.1 RCC1 1 1..51
RCC1 3..49 CDD:278826
RCC1 2 52..101
RCC1 52..99 CDD:278826
RCC1 3 102..154
RCC1 102..152 CDD:278826
RCC1 4 156..207
RCC1 157..205 CDD:278826
RCC1 5 208..259
RCC1 208..257 CDD:278826
RCC1 260..308 CDD:278826
RCC1 6 261..311
RCC1 7 313..366
RCC1 313..>343 CDD:278826
HECTc 709..1055 CDD:238033 141/350 (40%)
HECTc 735..1054 CDD:214523 131/320 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D276447at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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