DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ube3a and Wwp1

DIOPT Version :9

Sequence 1:NP_648452.1 Gene:Ube3a / 39266 FlyBaseID:FBgn0061469 Length:973 Species:Drosophila melanogaster
Sequence 2:XP_006237992.1 Gene:Wwp1 / 297930 RGDID:1311734 Length:968 Species:Rattus norvegicus


Alignment Length:987 Identity:232/987 - (23%)
Similarity:368/987 - (37%) Gaps:268/987 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 SGSAAGAVGGRATPEMKRSAVRSLIKRYFHQLQSGCGNANCSNANCAS--SGKVAPMTPNEVAAR 82
            :|.|....|...|....|.||...|....|...|....::|    |:.  :|:..|.:|.:||.|
  Rat   213 NGDAVHENGDPLTRTTPRLAVEGTIGIDNHVSTSTVVPSSC----CSHIVNGENTPSSPPQVATR 273

  Fly    83 ALQLFSQDAQLCEAFTSEANSPQDVDMLSPNDSSSSSSGSSTSTITSASTTTTTSRQSQSTPAAV 147
                 .|:....:..|||..|          |:.:..|.|..:..|||..|:..|..|.||....
  Rat   274 -----PQNTPAPKPLTSEPTS----------DTVNGESSSVLADSTSAMGTSLPSEDSTSTSNCT 323

  Fly   148 VVPVSSPYLTQSVPQLDIAGAEHSSGDSEPCTPTLAPVHSLDANSLIALYEQCRAADSYDRICHA 212
            ...|..|.: |..|    |.:|||.     |.|:.:.....:|.|||......|....:|::...
  Rat   324 STTVQEPPV-QEPP----ASSEHSE-----CIPSASAEVGPEARSLIDPDSDSRNNSGFDKVRQP 378

  Fly   213 IGVVFSSVDRLGKSFIRSAEPAASSSLQELLANSPGALNKEQLRTLEGEHDKDEDSTQQVDEQSE 277
            .|.|               ||....|         |..|.|.|.:...:.......|..||..:.
  Rat   379 EGCV---------------EPLRPQS---------GNTNTESLPSGWEQRKDPHGRTYYVDHNTR 419

  Fly   278 SAANATATAESVESEAEPEEEDDDVCSSQSSDTLVDLPGLRRVQRLLFGCQIRAITEKLTSSVIQ 342
                 |.|.|                               |.|.|..|                
  Rat   420 -----TTTWE-------------------------------RPQPLPPG---------------- 432

  Fly   343 LSDWVIYMRTDWERVIHCLVICFDLATNTNNSVVDMDYLDRVLPKLCQAASAMPVPAQARLARIW 407
                       |||.:           :....|..:|:..|.      .....|.....|....|
  Rat   433 -----------WERRV-----------DDRGRVYYVDHNTRT------TTWQRPTMESVRNFEQW 469

  Fly   408 AAHCSDQLHSLIAACQQQITLQVLLDEESMRENESIISVTKVLKIVFYANILASELERPSCRVP- 471
                ..|.:.|..|.||              .|:         :.::.|::||:|.: |...:| 
  Rat   470 ----QSQRNQLQGAMQQ--------------FNQ---------RYLYSASMLAAEND-PYGPLPP 506

  Fly   472 -LEDRTEAATASGSAAVEDDLFVYNSLLEPHMPKFAEDQFEKELQVSAIDCRKPLIPLEEFYNEA 535
             .|.|.::.         |.::..|     |..|  ..|:|        |.|...:|.|    |.
  Rat   507 GWEKRVDST---------DRVYFVN-----HNTK--TTQWE--------DPRTQGLPNE----EP 543

  Fly   536 LSENIQMHHDYLSYKTLAMESEIGSGHANYFSFMLYAFILTPSTKVDALYYDSRMRMYSERYSSL 600
            |.|..::.:.....:              ||              ||   :::|...:.:..:..
  Rat   544 LPEGWEIRYTREGVR--------------YF--------------VD---HNTRTTTFKDPRNGK 577

  Fly   601 HSILNNIGQVGQE---------------DNPRPD-LKLTVRRDQLINDALIGLEMVAMSNPKDLK 649
            .|:.....|:..|               .|..|. :|:.|.|..|..|:   .:.:....|.||:
  Rat   578 SSVTKGGPQIAYERSFRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDS---FQQIMALKPYDLR 639

  Fly   650 KQLVVEFVGEQGIDEGGVSKEFFQLIVEEIFNPAFGMFIQQEETNNMWFNATPF-----ENGAQF 709
            ::|.|.|.||:|:|.||:::|:|.|:..|:.||.:.:| :....||......|.     ::.:.|
  Rat   640 RRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLF-EYAGKNNYCLQINPASTINPDHLSYF 703

  Fly   710 TLIGIIIGLAIYNNVTLAVNFPMVVYRKLIGYCGTFADLSDWSPALYKSLKSMLDYQGQDMEEV- 773
            ..||..|.:|:::...:...|.:..|::::....|..||.......|.||..:.|   .::||. 
  Rat   704 CFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRD---NNIEECG 765

  Fly   774 FEQTFKISYSDVFGDVVQHELVPNGQDVLVGQHNKELFVNLYSDFLLNTNIEQQFNAFRKGFEMV 838
            .|..|.:. .::.|.|..|:|...|.::||.:.||:.::.|.:::..:..:::|..||..||..|
  Rat   766 LEMYFSVD-MEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEV 829

  Fly   839 TDESPLKLL--FRPEEIEMLVCGSREFDFVELENSTVYEGGYTEKSQYIQDFWSIVHAMPSEDKH 901
            .   ||:.|  |..:|:|:::||.:|.|..:.:.:|||. .||..|:.|..||..|....:|.:.
  Rat   830 V---PLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYR-HYTRNSKQIIWFWQFVKETDNEVRM 890

  Fly   902 KLLEFTTGSARVPVGGLKCL-------RLLITRHGPDSDRLPTSHTCFNVLLLPEYSSREKLEER 959
            :||:|.||:.|:|:||...|       :..|.:.|.|: .||.||||||.|.||.|.|.|:|:|:
  Rat   891 RLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVGKDT-WLPRSHTCFNRLDLPPYKSYEQLKEK 954

  Fly   960 LMKAINYSKGFG 971
            |:.||..::|||
  Rat   955 LLFAIEETEGFG 966

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ube3aNP_648452.1 AZUL 40..94 CDD:293166 13/55 (24%)
HECTc 620..971 CDD:238033 115/365 (32%)
HECTc 647..970 CDD:214523 108/337 (32%)
Wwp1XP_006237992.1 C2_E3_ubiquitin_ligase 67..190 CDD:175988
PARM 243..>400 CDD:293666 50/209 (24%)
WW 397..426 CDD:278809 7/64 (11%)
WW 429..458 CDD:278809 8/72 (11%)
WW 504..533 CDD:278809 9/52 (17%)
WW 545..574 CDD:238122 6/59 (10%)
HECTc 614..966 CDD:238033 115/364 (32%)
HECTc 637..965 CDD:214523 108/337 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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