DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ube3a and herc-1

DIOPT Version :9

Sequence 1:NP_648452.1 Gene:Ube3a / 39266 FlyBaseID:FBgn0061469 Length:973 Species:Drosophila melanogaster
Sequence 2:NP_490834.1 Gene:herc-1 / 171700 WormBaseID:WBGene00021685 Length:1019 Species:Caenorhabditis elegans


Alignment Length:897 Identity:227/897 - (25%)
Similarity:381/897 - (42%) Gaps:167/897 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   165 IAGAEH----------------SSG-----DSEPCTPTLAPVHSLDANSLIALYEQCRAADSYDR 208
            :|||.|                :||     |..|.| ::..||.:|...::    :....|::..
 Worm   196 LAGARHCLALSASGAVFTWGQNNSGELGIDDLRPQT-SVQHVHQMDGLGVV----EAACGDNHTV 255

  Fly   209 ICHAIGVVFS-SVDRL-----GKSFIRSAEPAASSSL-----QELLANS------------PGAL 250
            :....|..|| ..|.|     ||...:...|.|.|.|     ..:.|.:            |..|
 Worm   256 LLTHCGRTFSFGSDALGQCGFGKKVEKRTNPTAVSDLIGSHVTRIAAGACHTIAICKGAPYPFGL 320

  Fly   251 NKEQLRTLEGEHDKDEDSTQQVDEQSESAANATATAES------VESEAEPEEED--DDVCSSQS 307
            |.      .|:....:..||....:::...:.|.....      |.|....|:.:  ...|..|.
 Worm   321 NS------SGQLGNGKIMTQSTPRKTDELDHVTGVFAGYHQTFFVRSSGTIEQNEIVGPSCPMQY 379

  Fly   308 SDTLVDLPGLRRVQRLLFGCQIRAITEKLTSSVIQLSDWVIYMRTDWERVIHCLVICFDLATNTN 372
            ...| |...|:::.......::.::.|.:.||:..::  :.::..|..|  :.:..||:     .
 Worm   380 PIKL-DHESLKKLLDEGDALEVMSLIESVFSSLASMN--MSFLYKDERR--YNVGFCFE-----R 434

  Fly   373 NSVVDMDYLDRVLPKLCQAASAMPVPAQARLARIWAAHCSDQLHSLIAACQQQITLQVLLDEESM 437
            :..:|||          |...|..:..:..:.|        |...||..     :|::...|.| 
 Worm   435 SHGIDMD----------QVMEAFMLFDEYPMKR--------QYMELIVD-----SLKIAFQEWS- 475

  Fly   438 RENESIISVTKVLKI-----VFYANILASELERPSCRVPLEDRTEAATASGSAAVEDDLFVYNSL 497
             ||...|...:||.:     :|..|:....::  :...|..|.....|....||           
 Worm   476 -ENLKGIECLRVLLMLPWLPIFTENVNVQTIK--NVHTPFVDAMCLITGDLRAA----------- 526

  Fly   498 LEPHMPKFAEDQFEKELQV--SAI-----------DCRK---------------PLIPLEEFYNE 534
            ||....:.:...|.:.:.|  :||           ||.|               .:||||.||.:
 Worm   527 LEKWWTQLSTRHFRRMVTVFKTAIKAMLKAKKGPRDCHKFILIMQKLSLINKTYHIIPLETFYID 591

  Fly   535 ALSENIQMHHDYLSYKTLAMESEIGSGHANYFSFMLYAFILTPSTKVDALYYDSRMRMYSERYSS 599
            .|:.::.:..:|:...|   ..:......:|::.  :.|:|....|.:.::.::.:.....|.||
 Worm   592 ELNTSVDLKLEYVLELT---RQDPNKTELDYWTH--FPFLLNGVAKGELIFVEAWLMQTLRRQSS 651

  Fly   600 LHSILNNIGQVGQEDNPRPDLKLTVRRDQLINDALIGLEMVAMSNPKDLKKQLVVEFVGEQGIDE 664
            |.:..:  |.:..|   .|.|:|||||:.:::|.:  .:|..:|. .||:|.|.|...||...|.
 Worm   652 LFNTAH--GTIIFE---LPHLELTVRREFIVSDTM--NQMAGLSE-SDLQKPLKVNIAGEDADDA 708

  Fly   665 GGVSKEFFQLIVEEIFNPAFGMFIQQEETNNMWFNATPFE--NGAQFTLIGIIIGLAIYNNVTLA 727
            |||.||||.|::.:|....:|||.:.||::.:||:..|.|  :..||..:|.::||:|||:..:.
 Worm   709 GGVRKEFFILVMRKILQSDYGMFSEDEESHLVWFSGLPSEFCDREQFHQLGRLVGLSIYNHSIVP 773

  Fly   728 VNFPMVVYRKLIGYCGTFADLSDWSPALYKSLKSMLDYQGQDMEEVFEQTFKISYSDVFGDVVQH 792
            ..||:.:|:.|:.......||.:.||:..|.||.:|.|:..|:|:||...|.||: ::.|:....
 Worm   774 FPFPLALYKYLLDTPPDLEDLCELSPSEGKGLKMLLSYEEDDVEDVFGLNFCISF-NILGETHTT 837

  Fly   793 ELVPNGQDVLVGQHNKELFVNLYSDFLL----NTNIEQQFNAFRKGFEMVTDESPLKLLFRPEEI 853
            ||:..|.:..|...|::.:|.||....|    |..|.||...|||||........|: .|:|.|:
 Worm   838 ELLSGGTEKPVTNANRDEYVRLYVHHRLELGYNGEIAQQALLFRKGFSESLHSRTLR-FFQPCEL 901

  Fly   854 EMLVCGSREFDFVELENSTVYEGGYTEKSQYIQDFWSIVHAMPSEDKHKLLEFTTGSARVPVGGL 918
            :.::.|:..:|:.|..:..:|.|.|:.....||.||....|:..:::.|.|:|.|||.|:||.|.
 Worm   902 KEMIVGNENYDWNEFRDILMYRGEYSSSHPTIQAFWKAFFALTDDERRKFLQFLTGSTRIPVSGW 966

  Fly   919 KCLRLLITRHGPDSDRLPTSHTCFNVLLLPEYSSREKLEERLMKAINYSKGF 970
            :.|...|....|:|  ||.:|||||:|.||..:...:|..||..:|.:::||
 Worm   967 EELHAAIQPSAPES--LPVAHTCFNLLDLPNIADDVELLRRLRISIEHTEGF 1016

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ube3aNP_648452.1 AZUL 40..94 CDD:293166
HECTc 620..971 CDD:238033 127/357 (36%)
HECTc 647..970 CDD:214523 116/328 (35%)
herc-1NP_490834.1 ATS1 2..359 CDD:227511 32/173 (18%)
HECTc 667..1016 CDD:238033 125/355 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D276447at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR45622
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.920

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