DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ube3a and Ubr5

DIOPT Version :9

Sequence 1:NP_648452.1 Gene:Ube3a / 39266 FlyBaseID:FBgn0061469 Length:973 Species:Drosophila melanogaster
Sequence 2:XP_038936091.1 Gene:Ubr5 / 117060 RGDID:621236 Length:2798 Species:Rattus norvegicus


Alignment Length:1247 Identity:255/1247 - (20%)
Similarity:414/1247 - (33%) Gaps:400/1247 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 SGCGNANCSNANCASSGKVAPMTPNEVAARALQLF--SQDAQLCEAFTSEANSPQDVD------M 109
            |...::|..||:...|...|....:|..|.::..|  ..|:|..::..|:::|.|..|      |
  Rat  1626 SESNHSNQDNASGRRSVVTAATAGSEAGASSVPAFFSEDDSQSNDSSDSDSSSSQSDDIEQETFM 1690

  Fly   110 L------SPNDSSSSSSGSSTSTITSASTTTTTSRQSQSTPAAVVVPVSSP----YL-------- 156
            |      :.|.|.::.:..:..::..|...|...|.:.:.|::...|.:|.    |:        
  Rat  1691 LDEPLERTTNSSHANGAAQAPRSMQWAVRNTQHQRAASTAPSSTSTPAASSAGLIYIDPSNLRRS 1755

  Fly   157 -TQSVPQLDIAGAEHSSGDSEPCT--PTLAPVHSL------DANSLIALYEQCRAADSYDRICHA 212
             |.|......|.|..:|..|...|  .:||..:|:      |...||..|...    .|.:|..|
  Rat  1756 GTISTSAAAAAAALEASNASSYLTSASSLARAYSIVIRQISDLMGLIPKYNHL----VYSQIPAA 1816

  Fly   213 IGVVF----------------------SSVD------RLGKSFIRSAEP---------AASSSLQ 240
            :.:.:                      |.:|      |.|.:...:.:|         :.:|:.:
  Rat  1817 VKLTYQDAVNLQNYVEEKLIPTWNWMVSIMDSTEAQLRYGSALASAGDPGHPNHPLHASQNSARR 1881

  Fly   241 ELLANSPGALNKEQLRTLEGEHDKDEDSTQQ--VDEQSESAANATATAESVESEAEPEEEDD--- 300
            |.:.    |..:..||||||.......|.:|  :..:.:....|.:...|     ..:|..|   
  Rat  1882 ERMT----AREEASLRTLEGRRRATLLSARQGMMSARGDFLNYALSLMRS-----HNDEHSDVLP 1937

  Fly   301 --DVCS----------------SQSSDTLVDLPGLRRVQRLLFGCQIRAITEKLTSSVIQLSDWV 347
              ||||                :.:..|.:|.|.|.|               |.|..:::|.   
  Rat  1938 VLDVCSLKHVAYVFQALIYWIKAMNQQTTLDTPQLER---------------KRTRELLELG--- 1984

  Fly   348 IYMRTDWERVIHCLVICFDLATNTNNSVVDMDYLDRVLP-------KLCQAASAM-------PVP 398
                .|.|...|      :...:|:.|....|..|..||       ...:.:.:|       |.|
  Rat  1985 ----IDNEDSEH------ENDDDTSQSATLNDKDDESLPAETGQNHPFFRRSDSMTFLGCIPPNP 2039

  Fly   399 AQARLARIWAAHCSDQLHSL-----------------------IAACQQQITL------------ 428
            .:..||.  |...:||.|.|                       ...|..::|:            
  Rat  2040 FEVPLAE--AIPLADQPHLLQPNARKEDLFGRPSQGLYSSSAGSGKCLVEVTMDRNCLEVLPTKM 2102

  Fly   429 ----------------------QVLLDEE--SMRENESIISVTKVLKIVFYANILASELE----- 464
                                  |.:|.||  |.:...|...|...||....|.|..:|.|     
  Rat  2103 SYAANLKNVMNMQNRQKKAGEDQSMLAEEADSSKPGPSAHDVAAQLKSSLLAEIGLTESEGPPLT 2167

  Fly   465 --RPSC------------------------RVPLEDRTEAATASGSAAVEDDLF-VYNSLLEPHM 502
              ||.|                        ||.:||   .....||...|...| |..|.....|
  Rat  2168 SFRPQCSFMGMVISHDMLLGRWRLSLELFGRVFMED---VGAEPGSILTELGGFEVKESKFRREM 2229

  Fly   503 PKFAEDQFEKELQVSAIDCRKPLIPL------EEFYNEALSENIQMHHDYLSYKTLAMESEIGSG 561
            .|....| .::|.:.....|..||..      ..|.....:..:.:|...:::|.   |...|||
  Rat  2230 EKLRNQQ-SRDLSLEVDRDRDLLIQQTMRQLNNHFGRRCATTPMAVHRVKVTFKD---EPGEGSG 2290

  Fly   562 HA-NYFSFMLYAFILTPSTKVDALYYDSRMRMYSERYSSLHSILNNIGQVGQEDNPRPD------ 619
            .| ::::.:..||:  .:.|:..|  |.........::||...|.|.|:..:|.....:      
  Rat  2291 VARSFYTAIAQAFL--SNEKLPNL--DCIQNANKGTHTSLMQRLRNRGERDREREREREMRRSSG 2351

  Fly   620 LKLTVRRDQLINDALIGLEMVAMSNPKDLKKQLVVEFVGEQGIDEGGVSKE------FFQLIVEE 678
            |:...|||:                .:|.::||.::....:...||..|.:      ..|.:.|.
  Rat  2352 LRAGSRRDR----------------DRDFRRQLSIDTRPFRPASEGNPSDDPDPLPAHRQALGER 2400

  Fly   679 IF------NPAF-----GMFIQQEETNNMWFNATP------------------FENGAQ------ 708
            ::      .|||     ||.::......:...|:.                  .||||.      
  Rat  2401 LYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELIVAHGRENGADSILDLG 2465

  Fly   709 --------------------------------------------------------------FTL 711
                                                                          |..
  Rat  2466 LLDSSEKVQENRKRHGSSRSVVDMDLDDTDDGDDNAPLFYQPGKRGFYTPRPGKNTEARLNCFRN 2530

  Fly   712 IGIIIGLAIYNNVTLAVNFPMVVYRKLIGYCGTFADLSDWSPALYKSLKSM-LDYQGQDMEEVF- 774
            ||.|:||.:..|....:.....|.:.|:|....:.|.:.:.|.:|:||:.: |..|..|.:.|| 
  Rat  2531 IGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQSSDADAVFS 2595

  Fly   775 --EQTFKISYSDVFGDVVQHELVPNGQDVLVGQHNKELFVNLYSDFLLNTNIEQQFNAFRKGFEM 837
              :..|.:......|. .|.||:|||.::.|...|...:|..|::..:....||..:|.|||...
  Rat  2596 AMDLAFAVDLCKEEGG-GQVELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLD 2659

  Fly   838 VTDESPLKLLFRPEEIEMLVCGSREFDFVELENSTVY---EGGYTEK-SQYIQDFWSIVHAMPSE 898
            |..::.|:.| ..|:..:||.|..|.:...|.:.|.:   .|...|| .|:.:.|||||..|...
  Rat  2660 VLPKNSLEDL-TAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKRWFWSIVERMSMT 2723

  Fly   899 DKHKLLEFTTGSARVPVG--GLKCLRLLITRHGPDSDRLPTSHTCFNVLLLPEYSSREKLEERLM 961
            ::..|:.|.|.|..:|..  |.:.:. .||...||...|||::||.:.|.:|.|||::.|:::|:
  Rat  2724 ERQDLVYFWTSSPSLPASEEGFQPMP-SITIRPPDDQHLPTANTCISRLYVPLYSSKQILKQKLL 2787

  Fly   962 KAINYSKGFGML 973
            .||. :|.||.:
  Rat  2788 LAIK-TKNFGFV 2798

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ube3aNP_648452.1 AZUL 40..94 CDD:293166 11/42 (26%)
HECTc 620..971 CDD:238033 105/463 (23%)
HECTc 647..970 CDD:214523 101/435 (23%)
Ubr5XP_038936091.1 CUE_UBR5 184..230 CDD:270606
ZnF_UBR1 1177..1244 CDD:197698
PolyA 2389..2452 CDD:197769 8/62 (13%)
HECTc 2500..2795 CDD:214523 83/298 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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