DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Plod and plod1

DIOPT Version :9

Sequence 1:NP_648451.1 Gene:Plod / 39265 FlyBaseID:FBgn0036147 Length:721 Species:Drosophila melanogaster
Sequence 2:NP_001072340.1 Gene:plod1 / 779793 XenbaseID:XB-GENE-955414 Length:722 Species:Xenopus tropicalis


Alignment Length:729 Identity:327/729 - (44%)
Similarity:470/729 - (64%) Gaps:29/729 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LLLLLLAVTSQGDAESNWN-DKIKVFTVATEPTDGYTRYIRSARVYDIEVTTLGLGEEWKGGDMQ 71
            |||.:||:..|....:|.: |.:.|.|:|||.|||..|:.|||..::.:|..|||||||.     
 Frog     8 LLLGVLAIQPQSMNCANASADNLLVLTIATEETDGLKRFQRSAHSFNYKVKVLGLGEEWL----- 67

  Fly    72 KPGGGFKLNLLREAIAPYKNEPETIILFTDSYDVIITTTLDEIFEKFKESGAKILFSAEKYCWPD 136
              |.|.|:.|::.|:.||.::.:.|||||:|||||..:...|:.:||:::.:|::||||...:||
 Frog    68 --GEGQKVRLMKFALEPYADKEDLIILFTESYDVIFASGPGELLKKFRQAKSKVVFSAESVAYPD 130

  Fly   137 KSLANDYPEVEGKASRFLNSGAFIGYAPQVFALLVD-PIEDTADDQLYFTKIFLDETKRAKLGLK 200
            :.|.:.||.| |:..|||.||||||||..::.::.| ..:|...|||::||:|||..||.|:.:.
 Frog   131 RHLESKYPAV-GEGKRFLGSGAFIGYATHLYKMVADWDGKDKDSDQLFYTKLFLDPVKRGKINIT 194

  Fly   201 LDVQSRLFQNLHGAKNDVKLKVDLESNQGVLQNVDFMTTPSIIHGNGLSKVDLNAYGNYLAR--T 263
            ||.:.|:||||:|:..||.||  .|:.:...:.:.:.|.|.:|||||.:|:.||..|||:.|  |
 Frog   195 LDHRCRIFQNLYGSAEDVALK--FENGRVRARYLVYDTLPVLIHGNGPTKLHLNYLGNYIPRVWT 257

  Fly   264 FNGVCLLCQENLLDLEETNL---PVISLALMVTQPVPFFDQFLEGIESLNYPKEKLHLLIYSNVA 325
            |...|.:|.|.:.:||...:   |::.:.:.:.||.||..:|.:.:.:|||||:::.|.|.::..
 Frog   258 FESGCNVCDEGVRNLEGLTVDTFPLVVIGIFIEQPTPFVSEFFKRLNNLNYPKKRIQLYISNHEP 322

  Fly   326 FHDDDIKSFVNKHAKEYATAKFALSTDELDERQGRQLALDKAR-LHQSDYIFFVDADAHIDDGEV 389
            .|...:::|:..:..:|:..|.....:..|....|...:|..| ..:.:|.|.:||...:.:..:
 Frog   323 HHQRRVENFLQAYGTQYSFVKTVGPDENSDFADSRNKGMDMCRQTPECEYYFSIDAPVVLKNINI 387

  Fly   390 LRELLRLNKQFVAPIFSKHKELWSNFWGALSEGGYYARSHDYVDIVKRELIGMFNVPHVTSIYLV 454
            ||.|:..||..:||:.|:...||||||||||..||||||.||:.||:|:.||::|||:::|:|||
 Frog   388 LRILIEQNKSVIAPLVSRTANLWSNFWGALSSDGYYARSEDYIHIVQRQRIGVWNVPYISSVYLV 452

  Fly   455 KKTAFDAISFKHKEF-----DPDMAMCESLRNAGIFMYASNLRIFGHLVNADDFNTTVTRPDFYT 514
            |.:...:...::..|     |.|||.|.::|..||||:.:|.:.|||:::.:::.||....|.:.
 Frog   453 KGSILRSKLSQNDIFHSGTQDFDMAFCHNIRQQGIFMFVTNRQEFGHILSLENYKTTHLHNDLWE 517

  Fly   515 LFSNEIDWTEKYIHPNYSLQLNESNKIQQPCPDVYWFQIVSDAFCDDLVAIMEAHNGWSDGSNND 579
            :|.|..||.|||||||:|..| :...::.||||||||.|.|:..|::||..||....||.|||.|
 Frog   518 IFENTEDWKEKYIHPNHSEAL-KGKLVEMPCPDVYWFPIFSETTCNELVEEMENFGKWSSGSNKD 581

  Fly   580 NRLEGGYEAVPTRDIHMKQVGLERLYLKFLQMFVRPLQERAFTGYFHNPPRALMN--FMVRYRPD 642
            |||:||||.|||.||||.|:|.|:.:.|.|..|:.||.|:.|.||:   .||..:  |:|||:||
 Frog   582 NRLQGGYENVPTIDIHMNQIGYEKEWHKILLDFIAPLTEKLFPGYY---TRAQFDLAFVVRYKPD 643

  Fly   643 EQPSLRPHHDSSTYTINIAMNRAGIDYQGGGCRFIRYNCSVTDTKKGWMLMHPGRLTHYHEGLLV 707
            |||.|.||||:||:|||||:|..|.||:||||||:||||||...:|||.||||||||||||||.|
 Frog   644 EQPLLEPHHDASTFTINIALNSVGQDYEGGGCRFLRYNCSVRAPRKGWALMHPGRLTHYHEGLRV 708

  Fly   708 TNGTRYIMISFIDP 721
            |.|||||::||:||
 Frog   709 TKGTRYIVVSFVDP 722

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PlodNP_648451.1 Glyco_tranf_GTA_type 303..>395 CDD:325014 22/92 (24%)
P4Hc 555..719 CDD:214780 102/165 (62%)
plod1NP_001072340.1 P4Hc 557..720 CDD:214780 102/165 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 525 1.000 Domainoid score I299
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 678 1.000 Inparanoid score I718
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D107532at33208
OrthoFinder 1 1.000 - - FOG0001885
OrthoInspector 1 1.000 - - otm48374
Panther 1 1.100 - - LDO PTHR10730
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1243
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.160

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