DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Plod and plod2

DIOPT Version :9

Sequence 1:NP_648451.1 Gene:Plod / 39265 FlyBaseID:FBgn0036147 Length:721 Species:Drosophila melanogaster
Sequence 2:XP_004914412.1 Gene:plod2 / 100489636 XenbaseID:XB-GENE-1006449 Length:761 Species:Xenopus tropicalis


Alignment Length:757 Identity:314/757 - (41%)
Similarity:468/757 - (61%) Gaps:52/757 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 ALLLLLLA--VTSQ---GDAESNWNDKIKVFTVATEPTDGYTRYIRSARVYDIEVTTLGLGEEWK 66
            :.||:|.:  ||::   .|..:...||:.|.||||..|||:.|:::|||.:...|..||.|.|||
 Frog    15 SFLLILFSHRVTAEEPTADVAAISPDKLLVLTVATRETDGFHRFMQSARHFSYTVKVLGKGIEWK 79

  Fly    67 GGDMQKP-GGGFKLNLLREAIAPYKNEPETIILFTDSYDVIITTTLDEIFEKFKESGAKILFSAE 130
            |||:... |||.|:.||:||:...:::.:.:||||||||||.....:|:..||::|..|::|:||
 Frog    80 GGDVANTIGGGQKVRLLKEALESLEDQDDLVILFTDSYDVIFAGGPEEVLLKFQQSNHKVVFAAE 144

  Fly   131 KYCWPDKSLANDYPEV-EGKASRFLNSGAFIGYAPQVFALLVD-PIEDTADDQLYFTKIFLDETK 193
            ...||||.||:.||.| .||  ||||||.||||.|.|..::.. .::|..||||::|||::|:.:
 Frog   145 GLIWPDKRLADKYPVVRSGK--RFLNSGGFIGYLPNVKQIVQQWDLQDNDDDQLFYTKIYIDQIQ 207

  Fly   194 RAKLGLKLDVQSRLFQNLHGAKNDVKLKVDLESNQGVLQNVDFMTTPSIIHGNGLSKVDLNAYGN 258
            |..:.:.||.:|.||||::||.::|.|.  .|..:..::|..:.:.|.:|||||.:|:.||.:||
 Frog   208 RESISITLDHKSTLFQNINGALDEVILA--FEDGKARVKNSQYDSLPVLIHGNGPTKLQLNYFGN 270

  Fly   259 YLARTF---NGVCLLCQENLLDLEETN-LPVISLALMVTQPVPFFDQFLEGIESLNYPKEKLHLL 319
            |:...:   .| |..|..:..||...| .|.:::.:.:.||.||..:|...:.:|:||||.::..
 Frog   271 YIPNVWAPETG-CGTCDLDTTDLSTANAYPKVTVGIFIEQPTPFLPEFFNRLLALDYPKENMNFF 334

  Fly   320 IYSNVAFHDDDIKSFVNKHAKEYATAKFALSTDELDERQGRQLALDKARL-HQSDYIFFVDADAH 383
            |:::..:|:..|..|..:........|.....:.:.:.:.|.:.::..|. .:.||.|.:|||..
 Frog   335 IHNSEVYHEQHIVKFWEQAKNVIGNLKVVGPEEPIMQAEARNMGMNTCRQDKECDYYFNIDADVM 399

  Fly   384 IDDGEVLRELLRLNKQFVAPIFSKHKELWSNFWGALSEGGYYARSHDYVDIVKRELIGMFNVPHV 448
            :.:.:.|:.|:..|::.:||:.::|.:|||||||||:..||||||.||||||:.:.:|::|:|:|
 Frog   400 LTNPQTLKILIEQNRKIIAPLVTRHGKLWSNFWGALTPDGYYARSEDYVDIVQGKRVGLWNMPYV 464

  Fly   449 TSIYLVKKTAFDAISFKHKE--------FDPDMAMCESLRN---------------------AGI 484
            ..:||:|.   :.:..:.||        .|||||:|.:.|.                     .|:
 Frog   465 AHVYLIKG---ETLRSEMKERNLFSLDRLDPDMALCRNAREMNLQREKDSPSPATFHMFSPPKGV 526

  Fly   485 FMYASNLRIFGHLVNADDFNTTVTRPDFYTLFSNEIDWTEKYIHPNYSLQLNESNKIQQPCPDVY 549
            |||.:|...||.|::..::|||....|.:.:|.|.:||.||||:.||| ::...|.::||||||:
 Frog   527 FMYITNRHEFGRLLSTANYNTTHYNNDLWQIFENPVDWREKYINANYS-KIFTQNIVEQPCPDVF 590

  Fly   550 WFQIVSDAFCDDLVAIMEAHNGWSDGSNNDNRLEGGYEAVPTRDIHMKQVGLERLYLKFLQMFVR 614
            ||.::|:..||:||..||....||..::.|.|:.||||.|||.||||.|:||:..:|.|::.::.
 Frog   591 WFPVLSEKACDELVEEMENFGQWSGSAHTDTRIAGGYENVPTDDIHMNQIGLDNEWLHFIREYIA 655

  Fly   615 PLQERAFTGYFHNPPRALMNFMVRYRPDEQPSLRPHHDSSTYTINIAMNRAGIDYQGGGCRFIRY 679
            |:..:.|.||: ....||:||:|:|.||.|..||||||:||:|||||:|:...|:|||||||.||
 Frog   656 PITLKVFAGYY-TKGHALLNFVVKYTPDRQSYLRPHHDASTFTINIALNKKDTDFQGGGCRFARY 719

  Fly   680 NCSVTDTKKGWMLMHPGRLTHYHEGLLVTNGTRYIMISFIDP 721
            |||:...:|||..||||||||.||||.||||||||.:|||||
 Frog   720 NCSIESPRKGWSFMHPGRLTHLHEGLPVTNGTRYIAVSFIDP 761

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PlodNP_648451.1 Glyco_tranf_GTA_type 303..>395 CDD:325014 20/92 (22%)
P4Hc 555..719 CDD:214780 91/163 (56%)
plod2XP_004914412.1 P4Hc 596..759 CDD:214780 91/163 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 525 1.000 Domainoid score I299
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 678 1.000 Inparanoid score I718
OMA 1 1.010 - - QHG52469
OrthoDB 1 1.010 - - D107532at33208
OrthoFinder 1 1.000 - - FOG0001885
OrthoInspector 1 1.000 - - otm48374
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1243
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
98.980

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