DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ufd1-like and ufd-1

DIOPT Version :9

Sequence 1:NP_524023.1 Gene:Ufd1-like / 39254 FlyBaseID:FBgn0036136 Length:316 Species:Drosophila melanogaster
Sequence 2:NP_502348.1 Gene:ufd-1 / 3565860 WormBaseID:WBGene00006733 Length:342 Species:Caenorhabditis elegans


Alignment Length:300 Identity:114/300 - (38%)
Similarity:162/300 - (54%) Gaps:32/300 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 GFNMMFPEGR--NFHANYKCFSVSMLPG---NERTDVEKGGKIIMPPSALDTLTRLNVEYPMLFK 65
            |.:.|...||  |:...:..:....||.   ::.:::..||||::|.|||:.|.:.|:..|||||
 Worm     8 GLHGMQMGGRVGNYDQTFVVYGPVFLPNATQSKISEINYGGKILLPSSALNLLMQYNIPMPMLFK 72

  Fly    66 LTNVKKSRSSHAGVLEFVADEGKCYLPHWMMENLLLGEGDILNIESVSLPVATFSKFQPHSTDFL 130
            |||:...|.:|.|||||.|.||:..||.|||:.|.|.:||.:.|||.:||.|||:|.:|.|.:||
 Worm    73 LTNMAVQRVTHCGVLEFSAPEGQAILPLWMMQQLGLDDGDTIRIESATLPKATFAKLKPMSLEFL 137

  Fly   131 DITNPKAVLENALRNFACLTRGDVIAIKYNKKVYELCVLETKPGNAVSIIECDMNVEFEAPVGYK 195
            :|||||||||..||.:||||:.|.|...|..:..|..|::.||.|:|.|||||:|::|:.|.||.
 Worm   138 NITNPKAVLEVELRKYACLTKNDRIPTSYAGQTLEFLVVDLKPANSVCIIECDVNLDFDPPEGYV 202

  Fly   196 DHSE-----TQASGSGQQGAAGTVGGEIAGATNAILEEVVETFKGSGVRLDGKKKKESQL----- 250
            :...     ..|.......:|....|:.||.:....:.....|.|:|.|||||||..|.:     
 Worm   203 EQPRQVTPAVTAKPPAPDASAFIGAGQKAGGSGGTGQNATSVFGGAGRRLDGKKKPSSSVSLSDG 267

  Fly   251 -------------ETPVVKKVLARGVPDYDFQFGLIRFDR 277
                         :.|.:..|    |.:.|::.|.:.|.|
 Worm   268 TGVSTSNAAPVANDLPAIPPV----VVNEDYKPGRVSFLR 303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ufd1-likeNP_524023.1 UFD1 4..316 CDD:227469 113/299 (38%)
UFD1 17..190 CDD:281187 83/175 (47%)
ufd-1NP_502348.1 UFD1 21..197 CDD:281187 83/175 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160156089
Domainoid 1 1.000 170 1.000 Domainoid score I2282
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H39090
Inparanoid 1 1.050 193 1.000 Inparanoid score I2548
Isobase 1 0.950 - 0 Normalized mean entropy S1050
OMA 1 1.010 - - QHG53647
OrthoDB 1 1.010 - - D1134444at2759
OrthoFinder 1 1.000 - - FOG0003822
OrthoInspector 1 1.000 - - oto19926
orthoMCL 1 0.900 - - OOG6_101567
Panther 1 1.100 - - LDO PTHR12555
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2330
SonicParanoid 1 1.000 - - X2666
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1615.890

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