DRSC/TRiP Functional Genomics Resources

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Protein Alignment mRpL2 and AT4G36130

DIOPT Version :9

Sequence 1:NP_524022.1 Gene:mRpL2 / 39253 FlyBaseID:FBgn0036135 Length:294 Species:Drosophila melanogaster
Sequence 2:NP_195336.1 Gene:AT4G36130 / 829770 AraportID:AT4G36130 Length:258 Species:Arabidopsis thaliana


Alignment Length:284 Identity:58/284 - (20%)
Similarity:97/284 - (34%) Gaps:88/284 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 KVVEKPKPGAGQQFRRTVHFPEKYTVEPLKITHLAGRDPVSGRLVAKGIGGGIKQQYRWVKWVRD 97
            :|:...:.|||..|:...|             |..|  |...|.:..|              .|:
plant     3 RVIRAQRKGAGSVFKSHTH-------------HRKG--PAKFRSLDFG--------------ERN 38

  Fly    98 GPTEGAQEELVLEVLRDGCRTAKVALVAVGDELKY------ILATENMKAGDILKTSRFIPRIPV 156
            |..:|    :|.|::.|..|.|.:|.||.....::      .:|.|.|..|..|...:....:  
plant    39 GYLKG----VVTEIIHDPGRGAPLARVAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLV-- 97

  Fly   157 RPNEGDAYPLGALPVGTRIHCLEKNPGQMCHLIHAAGTFGTILRKFDEKVVV------------Q 209
               .|:..||.::|.|..|          |::.|..|..|...|...:..:|            :
plant    98 ---VGNVLPLRSIPEGAVI----------CNVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIK 149

  Fly   210 LPSKREFAFQRTCMATVGRLSNPEHNKEHVGSAQR-MREMGN-----RPRSGLWKRKEG------ 262
            |||..:......|.|.:|:::..       |..:: |.:.||     |.:...|.:..|      
plant   150 LPSGSKKIVPSGCRAMIGQVAGG-------GRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPV 207

  Fly   263 KH---GRKIRRLPPMTTISPPAPP 283
            :|   |...:.:...:|:...|||
plant   208 EHPHGGGNHQHIGHASTVRRDAPP 231

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRpL2NP_524022.1 Ribosomal_L2 68..147 CDD:278605 20/84 (24%)
Ribosomal_L2_C 161..275 CDD:281880 27/140 (19%)
AT4G36130NP_195336.1 PTZ00180 1..248 CDD:173464 58/284 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0090
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1156335at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100234
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.720

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