DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mRpL2 and Mrpl2

DIOPT Version :9

Sequence 1:NP_524022.1 Gene:mRpL2 / 39253 FlyBaseID:FBgn0036135 Length:294 Species:Drosophila melanogaster
Sequence 2:NP_001365986.1 Gene:Mrpl2 / 27398 MGIID:1351622 Length:315 Species:Mus musculus


Alignment Length:294 Identity:125/294 - (42%)
Similarity:163/294 - (55%) Gaps:32/294 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LLSTTLTIQTPFRTAPAFLQQLRGKTKVVEKPKPGAGQQFRRTVHFP-------------EKYTV 58
            |.|..:|.:.|.....|.:|     :.|:.:..|.......|.||..             .||||
Mouse    15 LASAAITARVPTLLPAAQIQ-----SNVLLQLPPALVSPSYRPVHMSADRSAKFVSWKSRTKYTV 74

  Fly    59 EPLKITHLAGRDPVSGRLVAKGIGGGIKQQYRWVKWVRDGPTEGAQ----EELVLEVLRDGCRTA 119
            :|:|:....|||. :||:...|||||.||.||.:.::|..|.:...    ||.|:.|..|.||:|
Mouse    75 KPVKMRKSGGRDH-TGRIRVHGIGGGHKQNYRMIDFLRFRPEKEKAPEPFEEKVVVVRYDPCRSA 138

  Fly   120 KVALVAVGDELKYILATENMKAGDILKTSRFIPRIPVRPNEGDAYPLGALPVGTRIHCLEKNPGQ 184
            .:||||.|...::|:|||||||||.:..|..|.|:.|...||||:|||||||||.|:.:|..||:
Mouse   139 DIALVAGGSRKRWIIATENMKAGDTILNSNHIGRMAVAAQEGDAHPLGALPVGTLINNVESEPGR 203

  Fly   185 MCHLIHAA---------GTFGTILRKFDEKVVVQLPSKREFAFQRTCMATVGRLSNPEHNKEHVG 240
            ....|.||         ||.|.:|||.:...::||||||:.....:|.|||||:||..||:..:|
Mouse   204 GAQYIRAAGGQAVSPSPGTCGVLLRKVNGTAIIQLPSKRQMQVLESCTATVGRVSNVNHNQRVIG 268

  Fly   241 SAQRMREMGNRPRSGLWKRKEGKHGRKIRRLPPM 274
            .|.|.|.:|.||.||||:||.|..|||||.||||
Mouse   269 KAGRNRWLGKRPNSGLWQRKGGWAGRKIRPLPPM 302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRpL2NP_524022.1 Ribosomal_L2 68..147 CDD:278605 39/82 (48%)
Ribosomal_L2_C 161..275 CDD:281880 64/123 (52%)
Mrpl2NP_001365986.1 RplB 75..>280 CDD:424298 92/205 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167842357
Domainoid 1 1.000 101 1.000 Domainoid score I6991
eggNOG 1 0.900 - - E1_COG0090
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H69198
Inparanoid 1 1.050 209 1.000 Inparanoid score I3667
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG46120
OrthoDB 1 1.010 - - D1156335at2759
OrthoFinder 1 1.000 - - FOG0003807
OrthoInspector 1 1.000 - - oto92936
orthoMCL 1 0.900 - - OOG6_100234
Panther 1 1.100 - - LDO PTHR13691
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1160
SonicParanoid 1 1.000 - - X3165
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1716.800

Return to query results.
Submit another query.