DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mRpL2 and rpl2

DIOPT Version :9

Sequence 1:NP_524022.1 Gene:mRpL2 / 39253 FlyBaseID:FBgn0036135 Length:294 Species:Drosophila melanogaster
Sequence 2:NP_051123.1 Gene:rpl2 / 1466246 -ID:- Length:274 Species:Arabidopsis thaliana


Alignment Length:222 Identity:64/222 - (28%)
Similarity:103/222 - (46%) Gaps:17/222 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 GRDPVSGRLVAKGIGGGIKQQYRWVKWVRDGPTEGAQEELVLEVLRDGCRTAKVALVAVGD-ELK 131
            ||: ..|.:.|:..|||.|:.||.:.:.|:......:   ::.:..|..|.|.:.|:..|| |.:
plant    40 GRN-ARGIITARHRGGGHKRLYRKIDFRRNAKDIYGR---IVTIEYDPNRNAYICLIHYGDGEKR 100

  Fly   132 YILATENMKAGDILKTSRFIPRIPVRPNEGDAYPLGALPVGTRIHCLEKNPGQMCHLIHAAGTFG 196
            |||.......||.:.:.   ..:|::  .|:|.||..:|:||.||.:|...|:...|..|||...
plant   101 YILHPRGAIIGDTIVSG---TEVPIK--MGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVA 160

  Fly   197 TILRKFDEKVVVQLPSKREFAFQRTCMATVGRLSNPEHNKEHVGSAQRMREMGNRP--RSGLWKR 259
            .::.|..:...::|||.......:.|.||||::.|...|::.:|.|.....:|.||  |..:...
plant   161 KLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNP 225

  Fly   260 KEGKHG-----RKIRRLPPMTTISPPA 281
            .:..||     ..|.|..|:|....||
plant   226 VDHPHGGGEGRAPIGRKKPVTPWGYPA 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRpL2NP_524022.1 Ribosomal_L2 68..147 CDD:278605 23/79 (29%)
Ribosomal_L2_C 161..275 CDD:281880 37/120 (31%)
rpl2NP_051123.1 rpl2 1..273 CDD:176993 64/222 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1156335at2759
OrthoFinder 1 1.000 - - FOG0003807
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100234
Panther 1 1.100 - - O PTHR13691
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3165
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.920

Return to query results.
Submit another query.