DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sod1 and sod3a

DIOPT Version :9

Sequence 1:NP_476735.1 Gene:Sod1 / 39251 FlyBaseID:FBgn0003462 Length:153 Species:Drosophila melanogaster
Sequence 2:NP_001092706.1 Gene:sod3a / 504078 ZFINID:ZDB-GENE-050309-208 Length:213 Species:Danio rerio


Alignment Length:176 Identity:65/176 - (36%)
Similarity:86/176 - (48%) Gaps:47/176 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VKAVCVIN-------GDAK--GTVFFEQE-SSGT-PVKVSGEVCGLAKGLHGF----------HV 46
            :.|.|.::       |..|  |.|.|.|. .:|| .||::         |.||          |:
Zfish    42 IYATCEVSPIPNLPAGQPKIFGQVLFRQVFPNGTAEVKIN---------LRGFPETDNQVRAIHI 97

  Fly    47 HEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITD----SKITLFG 107
            |::||.:.||:::|||:||....|      ..|.||:||.     .|.:..|..    .::.|||
Zfish    98 HQYGDLSQGCVTAGPHYNPQDVPH------PNHPGDMGNF-----MPKQGLIRRFLKLPEVKLFG 151

  Fly   108 ADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARI-GCGVIGIAK 152
            ..|::||.||||...||||.|..|.||.:||||.|| || ||||.|
Zfish   152 GQSVLGRAVVVHEKEDDLGMGADEESKRSGNAGRRIAGC-VIGITK 196

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sod1NP_476735.1 Cu-Zn_Superoxide_Dismutase 2..150 CDD:412632 62/172 (36%)
sod3aNP_001092706.1 Sod_Cu 60..192 CDD:278508 57/152 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1574423at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10003
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.020

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