DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sod1 and Sod1

DIOPT Version :9

Sequence 1:NP_476735.1 Gene:Sod1 / 39251 FlyBaseID:FBgn0003462 Length:153 Species:Drosophila melanogaster
Sequence 2:NP_035564.1 Gene:Sod1 / 20655 MGIID:98351 Length:154 Species:Mus musculus


Alignment Length:154 Identity:92/154 - (59%)
Similarity:117/154 - (75%) Gaps:2/154 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVVKAVCVINGD--AKGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHF 63
            |.:|||||:.||  .:||:.|||::||.||.:||::.||.:|.||||||::||||.||.|:||||
Mouse     1 MAMKAVCVLKGDGPVQGTIHFEQKASGEPVVLSGQITGLTEGQHGFHVHQYGDNTQGCTSAGPHF 65

  Fly    64 NPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQG 128
            ||:.|:||.|.||.||:|||||:.|..|....|:|.|..|:|.|..||||||:|||...||||:|
Mouse    66 NPHSKKHGGPADEERHVGDLGNVTAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKG 130

  Fly   129 GHELSKSTGNAGARIGCGVIGIAK 152
            |:|.|..|||||:|:.|||||||:
Mouse   131 GNEESTKTGNAGSRLACGVIGIAQ 154

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sod1NP_476735.1 Cu-Zn_Superoxide_Dismutase 2..150 CDD:412632 88/149 (59%)
Sod1NP_035564.1 Cu-Zn_Superoxide_Dismutase 3..147 CDD:238186 85/145 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167832326
Domainoid 1 1.000 182 1.000 Domainoid score I3448
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H392
Inparanoid 1 1.050 198 1.000 Inparanoid score I3791
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG61834
OrthoDB 1 1.010 - - D1574423at2759
OrthoFinder 1 1.000 - - FOG0000641
OrthoInspector 1 1.000 - - oto92134
orthoMCL 1 0.900 - - OOG6_101013
Panther 1 1.100 - - O PTHR10003
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1372
SonicParanoid 1 1.000 - - X1078
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1413.940

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