DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment APP-BP1 and Uba2

DIOPT Version :9

Sequence 1:NP_001261699.1 Gene:APP-BP1 / 39244 FlyBaseID:FBgn0261112 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_524756.2 Gene:Uba2 / 44496 FlyBaseID:FBgn0029113 Length:700 Species:Drosophila melanogaster


Alignment Length:545 Identity:126/545 - (23%)
Similarity:201/545 - (36%) Gaps:153/545 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 QTLLEAATVCLVNVTAVGCETAKGLVLPGIGGFTVADGSTVKEEDLGNNFFLDSSYLGKSKALAC 94
            |.|::.:.|.:|....:|||..|.|||.|.....:.|..|:...:|...|.....::|||||...
  Fly    14 QELVKKSKVLVVGAGGIGCEVLKNLVLSGFTDIEIIDLDTIDLSNLNRQFLFHREHVGKSKARVA 78

  Fly    95 MQLLQELNPDVN-GDYVDE--SADFLLANRPNFFDSFDLVIASNLNEQTLLLLAERLWELNVPLI 156
            .:.....|||.. ..|.|.  |.|:.:    |||..||||:::..|......:.......:||||
  Fly    79 RESALSFNPDAKITAYHDSVTSTDYGV----NFFKKFDLVLSALDNRAARNHVNRMCLNADVPLI 139

  Fly   157 YCRSLGMLGTIRL-----------------------QIRE------HCIVEA-HPDNRQFDLRLE 191
            ...:.|..|.:.|                       .||.      ||||.| |..|:.|...||
  Fly   140 ESGTAGYNGQVELIKRGLTQCYECTPKDKQRSFPGCTIRNTPSEPIHCIVWAKHLFNQLFGESLE 204

  Fly   192 HPFDALREHL--DGTEVTSKVPWLLVLHKYLNVWQKQQADGTQTPR-NYKEKNQLKETIREEMKA 253
            .      |.:  |..:..:|              :|...||...|: :.|||.   |..:||.:|
  Fly   205 D------EDISPDAADPDAK--------------EKDGGDGNGEPKGDGKEKG---EESKEEKEA 246

  Fly   254 DEENYEEAIKAVNTA-------FGAGQVPKSLKAIFEDDACEQLNKKSNVFWIMAKALKHFVIHE 311
            .|:.....|..:||.       :.||   |.....|.:| ...|.:.||: |...||        
  Fly   247 KEDTANGNIMRINTRQWAKDCNYDAG---KLFNKFFNED-ITYLLRMSNL-WKTRKA-------- 298

  Fly   312 NEGHLPLP----GVLPDMTANTDSYIALQHIYRQQALQDADQVYHKCQEYLKQLA---------- 362
                 |:|    .:||:.::.....:|.|| ::..::::..||:   ...||:|:          
  Fly   299 -----PVPVQWDTLLPEGSSGDQKDVAKQH-HKVWSIEECAQVF---ANSLKELSANFLKLEGDD 354

  Fly   363 -LPADSIDERSVRLICKEAAGLAVIRGTRIAEEYEKSSRLLPLVEDNELQGN----------LTA 416
             |..|..|:.::..:    |..|.:|....  :.|:.||.    |...:.||          :||
  Fly   355 TLAWDKDDQPAMDFV----AACANVRSHIF--DIERKSRF----EIKSMAGNIIPAIATTNAITA 409

  Fly   417 YNFALRAYERFLSECGNIPGECIVEQDIGRLKSIAAKMLSDLGMHATISDDVLHEICRYGGAELH 481
            ....:||::             ::|....:.|::.|::..:...|..:.|           |.|.
  Fly   410 GISVMRAFK-------------VLEAKWEQCKAVYARLRPNARNHFLVPD-----------ASLP 450

  Fly   482 AVSAFIGGCAAQEVI--KIITKQYK 504
            ..:.....||:...|  ||.||:.:
  Fly   451 GPNPNCHVCASDPAITLKIDTKRMR 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
APP-BP1NP_001261699.1 APPBP1_RUB 16..522 CDD:238770 126/545 (23%)
ThiF 17..>171 CDD:223552 43/166 (26%)
Uba2NP_524756.2 ThiF 7..>177 CDD:279270 43/166 (26%)
Uba2_SUMO 21..459 CDD:238766 117/520 (23%)
UAE_UbL 467..552 CDD:291402 4/9 (44%)
UBA2_C 573..691 CDD:292812
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45446856
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0476
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10953
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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