DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment APP-BP1 and uba1

DIOPT Version :9

Sequence 1:NP_001261699.1 Gene:APP-BP1 / 39244 FlyBaseID:FBgn0261112 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_998227.1 Gene:uba1 / 406335 ZFINID:ZDB-GENE-040426-2009 Length:1058 Species:Danio rerio


Alignment Length:528 Identity:96/528 - (18%)
Similarity:166/528 - (31%) Gaps:183/528 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 YDRQIRLWGEHGQTLLEAATVCLVNVTAVGCETAKGLVLPGIGGFTVADGSTVKEEDLGNNFFLD 82
            |.||:.:.|......::::.|.:..:..:|.|.||.::|.|:...|:.|....:.:||.:.|:|.
Zfish    55 YSRQLYVLGHDAMKRMQSSNVLISGLRGLGVEIAKNVILGGVKSVTLHDQGVAEWKDLSSQFYLR 119

  Fly    83 SSYLGKSKALACMQLLQELNPDVNGDYVD-ESADFLLANRPNFFDSFDLVIASN--LNEQTLLLL 144
            ...|||::|......|.|||     .||. .|....|.|  .:...|.:|:.:|  |:|||    
Zfish   120 EEDLGKNRADVSQPRLAELN-----SYVPVTSYTGTLTN--EYLTKFQVVVLTNSSLDEQT---- 173

  Fly   145 AERLWEL----NVPLIYCRSLGMLGTIRLQIREHCIVEAHPDNRQFDLRLEHPFDALREHLDGTE 205
              |:.|.    .:.||...:.|:.|.:.....|..||        ||...|.|..|:        
Zfish   174 --RIGEFCHSNGIKLIVADTRGLFGQLFCDFGEVMIV--------FDTNGEQPLSAM-------- 220

  Fly   206 VTSKVPWLLVLHKYLNVWQKQQADGTQTPRNYKEKNQLKETIREEMKADEENYEEAIKAVNTAFG 270
                                                                             
Zfish   221 ----------------------------------------------------------------- 220

  Fly   271 AGQVPKSLKAIFEDDACEQLNKKSNVFWIMAKALKHFVIHENEGHLPLPGVLPDMTANTDSYIAL 335
                   :..|.:|.|        .|...:.:|...|                    .:..|:..
Zfish   221 -------ISMITKDSA--------GVVTCLDEARHGF--------------------ESGDYVTF 250

  Fly   336 QHIYRQQALQDADQVYHKCQEYLKQLALPADSIDERSVRLICKEAAGLAVIRGTRIAEEYEKSSR 400
            ..:.....|...|.|      .:|.|.....|        ||..::....:||..:.:     .:
Zfish   251 TEVQGMTELNGCDPV------EIKTLGPYTFS--------ICDTSSFSDYVRGGIVTQ-----VK 296

  Fly   401 LLPLVEDNELQGNLTAYNFALRAYERFLSECGNIPGECIV--------------------EQDIG 445
            :...:....|..::....|.|..:.:|     :.||:..|                    :.|..
Zfish   297 MPKKIAFKSLSSSMAEPEFLLTDFAKF-----DRPGQLHVGFQALHAFEKKHSRLPKPWNQADAD 356

  Fly   446 RLKSIAAKM---LSDLGMHATISDDVLHEICRYGGAELHAVSAFIGGCAAQEVIKIITKQYKPID 507
            .|.::|.::   .:.......:...|:.::......:|..|:|||||.|||||:|..|.::.||.
Zfish   357 ELMTLAEEVNAAQTGSAKQEELDQAVIKKLACVAAGDLAPVNAFIGGLAAQEVMKACTGKFMPIM 421

  Fly   508 NTFIYNAI 515
            ....::|:
Zfish   422 QWLYFDAL 429

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
APP-BP1NP_001261699.1 APPBP1_RUB 16..522 CDD:238770 96/528 (18%)
ThiF 17..>171 CDD:223552 43/159 (27%)
uba1NP_998227.1 Ube1 49..1055 CDD:273603 96/528 (18%)
Ube1_repeat1 54..436 CDD:238768 96/528 (18%)
E1_4HB 303..366 CDD:292809 10/67 (15%)
Ube1_repeat2 471..1011 CDD:238767
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0476
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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