DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment APP-BP1 and uba-1

DIOPT Version :9

Sequence 1:NP_001261699.1 Gene:APP-BP1 / 39244 FlyBaseID:FBgn0261112 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_001033404.1 Gene:uba-1 / 177855 WormBaseID:WBGene00006699 Length:1113 Species:Caenorhabditis elegans


Alignment Length:586 Identity:135/586 - (23%)
Similarity:205/586 - (34%) Gaps:197/586 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SPELSDKSKKYDRQIRLWGEHGQTLLEAATVCLVNVTAVGCETAKGLVLPGIGGFTVADGSTVKE 72
            |.||.||: .|.|||...||.....|..|:|.:..:.:||.|.||.|:|.|:...|:.|....|.
 Worm    99 SDELLDKN-LYSRQIYTLGESAMVNLRTASVLISGLGSVGVEIAKNLILGGVRHVTIHDTKLAKW 162

  Fly    73 EDLGNNFFLDSSYLGKSKALACMQLLQELNPDVNGDYVDESADFLLANRPNFFDSFDLVIASNLN 137
            .||...::|..:.:|.::|.:|.:.|.|||..||   |..|.|.|   ...|..:||||:.::..
 Worm   163 SDLSAQYYLRDADVGHNRATSCYERLAELNDSVN---VQVSTDEL---TEEFVKTFDLVVLTDAA 221

  Fly   138 EQTLLLLAERLWELNVPLIYCRSLGMLGTI--------RL------QIREHCIVEAHPDNRQFDL 188
            ......:|......|..::...:.|:...|        |:      |:||..|  .|.|....::
 Worm   222 RTAQRQIAAWTRAHNRRILITDARGVFSYIFNDFGDNFRIDDATGEQVREFFI--EHIDKTTGEV 284

  Fly   189 -RLEHPFDALREHLDGTEVT-SKVPWLLVLHKYLNVWQKQQADGTQTPRNYKEKNQLKETIREEM 251
             .||:.|..|.   ||..|| |:|..|            .:.:|.:         .||.|::...
 Worm   285 TTLENLFHGLE---DGDHVTFSEVKGL------------TEINGCE---------PLKITVKNAS 325

  Fly   252 KADEENYEEAIKAVNTAFGAGQVPKSLKAIFEDDACEQLNKKSNV---------------FWIMA 301
            |                |..|....|.....|...|.|:...::|               .|..|
 Worm   326 K----------------FNIGDFAVSFSDYKEGGRCRQVKVPTSVSHVPFEKSLVEPEFGIWDYA 374

  Fly   302 K------------ALKHFVIHENEGHLPLPGVLPDMTANTDSYIALQHIYRQQALQDADQVYHKC 354
            |            ||  :...|..|..|.|                      ::.|||       
 Worm   375 KFEYPSQLHALWTAL--YAFEEKYGRSPAP----------------------RSTQDA------- 408

  Fly   355 QEYLKQLALPA--DSIDERSVRLICKEAAG----LAVIRGTRIAEEYEK--SSRLLPL------- 404
             ..||:| :|:  :.|.|:.:.|....|:|    ::.:.|...|:|..|  :..:.||       
 Worm   409 -ALLKEL-IPSGTEEIPEKLIELFSFSASGNLVTVSSVVGGIAAQEAMKGVTHHMTPLKQWLHLD 471

  Fly   405 -VEDNELQGNLTAYNFALRAYERFLSECGNIP----------------GECIVEQD---IGRLKS 449
             ||  .|.|:.|:::      ...|||....|                .||:..|.   :| ..:
 Worm   472 HVE--VLPGDWTSFD------NSKLSETDCQPRQSRYDGQAAVFGWPYQECLFRQRWFVVG-AGA 527

  Fly   450 IAAKMLSDLGMHATISDDVLHEICRYGG------------AELHAVSAF----IGG----CAAQE 494
            |..::|.:|.|        :...|..||            :.|:....|    :||    |||:.
 Worm   528 IGCELLKNLSM--------MGVACGEGGLIKITDMDQIEISNLNRQFLFRRRDVGGKKSECAARA 584

  Fly   495 V 495
            |
 Worm   585 V 585

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
APP-BP1NP_001261699.1 APPBP1_RUB 16..522 CDD:238770 130/578 (22%)
ThiF 17..>171 CDD:223552 46/167 (28%)
uba-1NP_001033404.1 Ube1 103..1111 CDD:273603 132/582 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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