DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment APP-BP1 and mocs3

DIOPT Version :9

Sequence 1:NP_001261699.1 Gene:APP-BP1 / 39244 FlyBaseID:FBgn0261112 Length:524 Species:Drosophila melanogaster
Sequence 2:XP_031758108.1 Gene:mocs3 / 100491723 XenbaseID:XB-GENE-5804173 Length:455 Species:Xenopus tropicalis


Alignment Length:457 Identity:98/457 - (21%)
Similarity:163/457 - (35%) Gaps:105/457 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PELSDKS------KKYDRQIRL--WGEHGQTLLEAATVCLVNVTAVGCETAKGLVLPGIGGFTVA 65
            |||:..|      .:|.||:.|  :|..||..|...:|.::....:||..|:.|...|||...:.
 Frog    45 PELNKSSLTNPDILRYSRQLVLPEFGVQGQLNLSKVSVLVIGCGGLGCPVAQYLAASGIGRLGLL 109

  Fly    66 DGSTVKEEDLGNNFFLDSSYLGKSKALACMQLLQELNPDVNGDYVDESADFLLANRPNFFDSFDL 130
            |...|:..:|........:.||..|:::.::.||:||..|  .|:.........|.......:|:
 Frog   110 DYDVVEMSNLHRQVLHGENRLGMPKSVSIVKTLQKLNSSV--IYLPYHMSLNPENGLQIIRQYDI 172

  Fly   131 VIASNLNEQTLLLLAERLWELNVPLIYCRSLGMLGTIRLQIRE-----HCIVEAHPDNRQFDLRL 190
            :...:.|..|..|:.:.......||:...:|...|.:.:...:     .|:....|         
 Frog   173 IADCSDNVPTRYLVNDACVLAGKPLVSASALRWEGQLTVYNYQQGPCYRCLFPKPP--------- 228

  Fly   191 EHPFDALREHLDGTEVTSKVPWLLVLHKYLNVWQKQQADGTQTP----------------RNYKE 239
              |.:.:....|| .|...||.::...:.|.|  .:.|.| ..|                ||.|.
 Frog   229 --PSETVTNCADG-GVLGIVPGIIGSLQALEV--LKIASG-MVPSYSGVLLMFDALEGRFRNIKI 287

  Fly   240 KNQLKETIREEMKADEENYEEAIKAVNTAFGAGQVPKSLKAIFEDDACEQLNKKSNVFWIMAKAL 304
            :.:     :.:..|...:.|.||.....||.....         .|.|..|:..|....:..:..
 Frog   288 RGK-----QNDCAACSNSAETAILQDYEAFCGSSA---------SDKCRMLSLLSRDERLSVEEY 338

  Fly   305 KHFVIHENEGHLPLPGVLPDMTANTDSYIALQHIYRQQALQDADQVYHKCQEYLKQLALP----- 364
            |..:    :.|  :|.:|.|:              |.|...|..|:.|.....||.|...     
 Frog   339 KRLL----DDH--IPHILIDV--------------RPQPEVDICQLPHSIHIPLKGLEQKNEKWI 383

  Fly   365 -------ADSID-----ERSVRLICK--EAAGLAVIRGTRIAEEYEKSSRLLPLVEDNELQGNLT 415
                   |:.|:     |::|..|||  ..:.:||    :|.:|...:...|.:|:|  :||.|.
 Frog   384 SFLRTKIAELINTGNRVEKTVITICKLGNDSQIAV----KILQEIFGNEVDLFVVKD--VQGGLM 442

  Fly   416 AY 417
            |:
 Frog   443 AW 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
APP-BP1NP_001261699.1 APPBP1_RUB 16..522 CDD:238770 94/444 (21%)
ThiF 17..>171 CDD:223552 37/155 (24%)
mocs3XP_031758108.1 ThiF_MoeB_HesA_family 59..287 CDD:238386 52/244 (21%)
RHOD 324..455 CDD:412175 33/147 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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