DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG7888 and avt3

DIOPT Version :9

Sequence 1:NP_648425.1 Gene:CG7888 / 39232 FlyBaseID:FBgn0036116 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_593551.1 Gene:avt3 / 2543612 PomBaseID:SPAC3H1.09c Length:656 Species:Schizosaccharomyces pombe


Alignment Length:489 Identity:116/489 - (23%)
Similarity:220/489 - (44%) Gaps:71/489 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 MTKNGHSNSAY----------VADHPDKLELAEKGQ-KNKAVVAKDPDYNP-------------- 43
            |:.|.|.|..:          |..|....||:|:.: ::....|...|.||              
pombe   196 MSSNAHGNPNFLNRNFIEFLSVYGHFAGEELSEEDEDEDTDDFAMPRDVNPSLIHSTVPSEQEPL 260

  Fly    44 --YHHR-DVEHP--TTNSETLFHLLKGSLGTGILAMPNAFRNSGYITGSIGTIVIGFICTFCIHQ 103
              .|.| .::.|  .:|.:.:..|||..:|||:|.:|.||:..|.:..|...:::|.:...|...
pombe   261 ISRHGRYKLQTPGNASNGKAVLLLLKSFVGTGVLFLPKAFKLGGLVFSSATLLIVGVLSHICFLL 325

  Fly   104 LVKAQYELCRRKKMPSMNYPMVAETAMGEGPKCFRVFAPYIGTVVNTFLLIYQLGTCCVYVVFVA 168
            |::.      |.|:|. ::..:..|          ::.|::...:...:::.|:|....|:.|||
pombe   326 LIQT------RMKVPG-SFGDIGGT----------LYGPHMRFAILASIVVSQIGFSSAYISFVA 373

  Fly   169 SNIKAIVDAVADTSIDVRLCMIIIL--LPLILINWVRNLKYLAPFSTLANAITMVSFGIICYYIF 231
            |.::|.|..::.|..:..|.:.|.:  |..:.::.||.:..|:..:.:|:...::.   |.|..|
pombe   374 STLQACVKVISTTHREYHLAVFIFIQFLVFVPLSLVRKISKLSATALIADVFILLG---ILYLYF 435

  Fly   232 REPVTTEGKD----AFGKPSNFPLFFGTVLFALEAIGVILPLENEMKTPQKFGGSCGVLNVSMVL 292
            .:.:|...|.    |....::|.||.|..:|..|.|.:|||::.:|..|:...   .:|...|..
pombe   436 WDVITLATKGIADVAMFNKTDFSLFIGVAIFTYEGICLILPIQEQMAKPKNLP---KLLTGVMAA 497

  Fly   293 IVFLYVGMGLFGYLNYGSAVLGSITLNMPEHEVLSMCVKGMLAFAIYITHGLACYVAIDITWNDY 357
            |..|::.:||..|..:||.|...:.||||| ...::.::.:.|.||.::..|..:.||.|. ...
pombe   498 ISLLFISIGLLSYAAFGSKVKTVVILNMPE-STFTVIIQFLYAIAILLSTPLQLFPAIAII-EQG 560

  Fly   358 VAKRLGAQRNALFW-EYAVRTGLVLITFLLAVA-IPNLELFISLFGALCLSALGLAFPALIQICT 420
            :..|.|.:...:.| :..:|..:|::..|::.| ...|:||:|:.|::|...|...:|.::    
pombe   561 IFTRSGKRNRKIKWRKNYLRVLIVILAILISWAGSSRLDLFVSMVGSVCCIPLIYMYPPML---- 621

  Fly   421 HWYNTKGFAKVWLVLS-NFVLIIVGILGLVIGTY 453
            |:   |..|..|::.: :..:..:|...:...||
pombe   622 HY---KACANNWILRTLDIFMFTIGAFAMAFTTY 652

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7888NP_648425.1 SLC5-6-like_sbd 51..453 CDD:294310 99/412 (24%)
SdaC 62..456 CDD:223884 99/401 (25%)
avt3NP_593551.1 SdaC 270..656 CDD:223884 101/415 (24%)
Aa_trans 273..656 CDD:279788 100/412 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 126 1.000 Domainoid score I1377
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 126 1.000 Inparanoid score I1449
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000138
OrthoInspector 1 1.000 - - otm47069
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X121
TreeFam 00.000 Not matched by this tool.
87.860

Return to query results.
Submit another query.