DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG7888 and skat-1

DIOPT Version :9

Sequence 1:NP_648425.1 Gene:CG7888 / 39232 FlyBaseID:FBgn0036116 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_498989.1 Gene:skat-1 / 176271 WormBaseID:WBGene00010307 Length:460 Species:Caenorhabditis elegans


Alignment Length:488 Identity:122/488 - (25%)
Similarity:215/488 - (44%) Gaps:82/488 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 EKGQKNKAVVAKDPD---------YNPYHHRDVEHPTTNSETLFHLLKGSLGTGILAMPNAFRNS 81
            |:|::....|..|.:         ..|....||..||   ..:..|.|.....|..::|.|::  
 Worm     4 EEGRERAVTVEGDAESMNDGRALVQPPARSGDVITPT---RAVLTLSKSMFNAGCFSLPYAWK-- 63

  Fly    82 GYITGSIGTIVIGFICTFCI--------HQLVKAQYELCRRKKMPSMNYPMVAETA--------M 130
                  :|.:.:.|:.:|.|        |.||:|...|.::....:::|...|:..        :
 Worm    64 ------LGGLWVSFVMSFVIAGLNWYGNHILVRASQHLAKKSDRSALDYGHFAKKVCDYSDIRFL 122

  Fly   131 GEGPKCFRVFAPYIGTVVNTFLLIYQLGTCCVYVVFVASNIKAIV-DAVADTSIDVRLCMIIILL 194
            ....|....|       ||..:|.||||.|.|.::|::.|:..:| |.:..|.....:.|..:.|
 Worm   123 RNNSKAVMYF-------VNVTILFYQLGMCSVAILFISDNLVNLVGDHLGGTRHQQMILMATVSL 180

  Fly   195 PLILI-NWVRNLKYLAPFSTLANAITMVSFGIICYYIFREPVTTEGKDAFGKPSNFP---LFFGT 255
            ..||: |....::.::.|:.:::...::...:|..|..::|   ...|.....:||.   ...|.
 Worm   181 FFILLTNMFTEMRIVSFFALVSSVFFVIGAAVIMQYTVQQP---NQWDKLPAATNFTGTITMIGM 242

  Fly   256 VLFALEAIGVILPLENEMKTPQKFGGSCGVLNVSMVLIVFLYVGMGLFGYLNYGSAVLGSITLNM 320
            .::|.|...:|||:||::..|..|....|||:.:|::.......:|.|||..:|.::..:||.|:
 Worm   243 SMYAFEGQTMILPIENKLDNPAAFLAPFGVLSTTMIICTAFMTALGFFGYTGFGDSIAPTITTNV 307

  Fly   321 PEHEVLSMCVKGMLAFAIYITHGLACYVAIDITWNDY----------VAKRLGAQRNALFWEYAV 375
            |: |.|...|...|.....:.:.:|.||..|:.:|.:          |.|.|..:...:||    
 Worm   308 PK-EGLYSTVNVFLMLQSLLGNSIAMYVVYDMFFNGFRRKFGARFPNVPKWLSDKGFRVFW---- 367

  Fly   376 RTGLVLITFLLAVAIPNLELFISLF----GALCLSALGLAFPALIQICTHWYNTKGF----AKVW 432
                ||:|:|:||.||.||:.|.|.    ||||    .|.||...::.|.|.:.||.    .::.
 Worm   368 ----VLVTYLMAVLIPKLEIMIPLVGVTSGALC----ALIFPPFFEMITFWTDWKGLLTYRQRMT 424

  Fly   433 LVLSNFVLIIVGILGLVIGTYTSLKEIVLTFSE 465
            .:..|.|::.:|:..::.|.||::..|:.:||:
 Worm   425 KIFINLVVMAIGVFAIIAGVYTNIHAIIQSFSQ 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7888NP_648425.1 SLC5-6-like_sbd 51..453 CDD:294310 110/440 (25%)
SdaC 62..456 CDD:223884 110/432 (25%)
skat-1NP_498989.1 Aa_trans 35..446 CDD:279788 112/444 (25%)
SdaC 40..448 CDD:223884 111/441 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54358
OrthoDB 1 1.010 - - D284074at33208
OrthoFinder 1 1.000 - - FOG0000138
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22950
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X121
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
87.890

Return to query results.
Submit another query.